Pame027838.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000499.1:1431398-1456897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.34 39 6.2 0.8 2 21 406 425 405 426 0.94 2 15 0.029 3.3 9.6 3.0 2 19 472 489 471 491 0.94 3 15 4.5 5.1e+02 2.7 0.5 3 23 534 555 533 555 0.93 4 15 0.0049 0.56 12.0 0.4 3 23 563 583 562 583 0.97 5 15 0.0038 0.44 12.3 0.2 1 23 590 613 590 613 0.96 6 15 0.001 0.12 14.1 1.9 1 23 620 642 620 642 0.98 7 15 0.32 37 6.3 3.8 1 22 692 713 692 716 0.91 8 15 0.19 21 7.0 9.8 1 23 721 743 721 743 0.97 9 15 0.0037 0.42 12.4 0.4 1 23 759 784 759 784 0.97 10 15 0.037 4.2 9.3 4.0 1 23 796 819 796 819 0.96 11 15 0.0013 0.15 13.8 2.5 2 23 825 847 824 847 0.94 12 15 0.19 22 7.0 1.8 2 23 851 873 850 873 0.94 13 15 0.0017 0.19 13.4 0.9 1 23 883 905 883 905 0.98 14 15 0.0075 0.85 11.4 2.1 1 23 911 933 911 933 0.98 15 15 6.2 7.1e+02 2.2 1.2 5 23 949 968 939 968 0.85
Sequence Information
- Coding Sequence
- ATGGCGCTTAGAGTTACGGCAACCACTAGATTTTGTTTAAATTGCAAAATAAACTCTGATGATAATGCTGGAAAGAAATTTCATGAAATCTTCGATGATGTAGGCCTAGAATTGCAATTACCCTCCTTAGTCGAAACTTTTTTTCACATTGATGTTAAAAATAAGGATAAACAACATCTTTGTGATGATTGTGTTAATCGTTTAATAGAGTTATATGATATGGTGGTGCACACCAATGATAAAAGTAAGACAAATAATTTAAAAAAGAAGAAAGAATGTAGTAATAATGAAGAAAGTAGTAAATACCTCCAAATTGAAAGTAGAAATTTTAGATACGAACTTGAAAATGATTATAAACCTTTTGCTATTGTTCAAAATAATACTCAAGTTACTTTACCAAAAAATAATTATATTGAATGCACAAACTTTGAAACTTCTGTTTCAACACAAGGAGAAACTGCTTTAGAAATTCATAAAGAGAATAAATCTGAAGATAAAGATCGAACCGAATATGAAAATATTGAAGATGTAGGACATTTCGTTAACAAAAACAGATTTGCAACTTTTACCCTGCAACGGAACAAAATTAGTAGTGATATTGGTAACTATTTCCCAAAAGAATATTTTGATCAAAATGGTGAAAAGGATCTTTCACAAGATTTCGAAATATCATTACCATCTGGTGGAAAAAAAGATAAAAAATCAGATGAACTAGAATTTAATGAACATATTGAATTTATCATCGATGATGGGGTCCAAAATGTGAAAATAAATAAACAGTCTAATAAAAAAATCCCAGTTAATGCATGCGAAAATGAAGATGAAACTTTAGCAGCTTACACACCAAACAAAATTCATAATGAAAATGAAGGTCGGGAAAATTTATATGTTGAAGAAGTCGATGATCGATCCAATCAAGGTATAAACAGCTGTGATTCCAACTCATTACTAGAAGAACTTGAAATTTCCAAAGAAAAGGAAGCTTTATTATTAAATGTAAGTAGTAGTGCAAAAGATTTTAATAATAGAGAACATATTGATACATATGATTTTATTGAACAGGAAGGCATAACTGATGATACATATTCATTAGAAGAAGAGGATTTAATAGCCGAAACTATTTTGTCTGACGAATTTGATCAAGTTGATTTAAATTGGTATTTGGATACGGTACTATTAACAAAATTTGAAGACTTGCAGTTAAATTGGGATGTGGAATGTAAATTATGCCTTGAAAAATATAACTCCTTTGGGGAATTATTAAAACATCAGTGCATGGCAGAATTCGAAAGGGAGCAACAATTGTCTTGTATTATTAAAGATTGCGAAGAAGATGCAAAAGATTTACCAACTTTAGCAAGGCATTTAATACTAACACATTATGATAAATTAGAAAGTACCACCATTCATGGAAAATGCAAAGATTGCCAAAAAACATTTTCAAGTGTTTTAGATTTTAATAAGCACTCTTGTTGCCGAAAAATAAAACGAAAAACTGGTACACCAAATTATTGTAAATATTGCGACTTGAATTTTCAATCTTTCAAAAGATATGTCTTTCATACGCAGTTCCATTTAAAAAACCACAGGCCAAAAATTTGCTTATTATGTGGTGATCTATTCAATAATTCTAATGATTTCTTTGAACATACTCAATATAAACATAATCCTAAGACTGCTTCGGCGTGTGAAAGATGTGACCGCTTTTTTAATGATATACAAGCTTTTAATTATCATATGAAAATACATGATGATTCTAAATATCTATATGAATGTGCACGTTGTCCAAAAAAATATACTGCTAAATTTGGTTTAATTCAACATATGGATATTAGTCATAACAACAAATTTAATGCCTTCAAATGTGAATATTGTCCAAAAAAATTTGGTTATAAAAAAGTATACATTAATCATGTTAAATCGCATGCTACAGATGCCAAAGTACAAGCATTTATATGCTCAAGATGTGGTTTAATAACTAATAAAATGGAGATTATAAAGGATCATATTGAGTCAGATAATAAATCTCCTTGTTTTTCATCGCCGGTTGACAAGAAAATTTTAGGTTTGTGCTATTCATGTGTAAATTGTTCCTTAGATTTTTGCACAATTAAACATCTTAAAGATCATCGTTTAAGTGATACTCACAGTGATGATTTATTTCATTGCGGTTTGTGTAGAAAAAGTTTCAATACTTTTCACCACATGCGTAATCATTTAACTAAACACAAGAATTTCGAAGAATGGCAGAAATTGTTTCCAATAACTAAACATTTTGTATGCAATGTAGAGGATTGTGAAGAGTTTTATTCAACATGGGTCTCTTTATATCAACACAAAAAACGTCTGCACAAAACTAATGAAGAAACAAATTTATCCACAGAGTTTAAATGCCAATTTTGTCAGCAGTCGTACTCTTTAAAACATTCTTTGTCTGTTCATGTAACTAGAAGCCATATTAATGCAAAAATTAAATGCTCTTATTGCATGAGAAGTTTTAATTCCCAAATTCATTTACAAAAACATATTGTTAAAAGTCATATACCCGTTGAATGTGATATCTGTTTTAAGAAATTTAAATGTCGACTCTATTTAGAAAGTCACATCATGAATTTACATGAAAAGAAAGTTCACAAAAACAATAATCATAAATGTAAATTATGCAATTTTGTAACAATTTATCCGGCATCTTTGAAAATGCATATGGAGATACATAATAACCGGCTTAAATTTAAATGTTTCACTTGTTACAAATTATTTGGAAGCAAACCACAATTAGAGAGTCACGTGAAAAAACATCTAAATAAAAATAAATACAGTTGTGCCCGTTATTTGAAGGAAAGTGGCTGTAATGCTTCTTTTTTAACTTATAATCTACTGAAAAAACATGCACACACTAAACATAAAACTTCAAGTTTTAGTATTAATTTAAAAAGAGAAGAACATCGAAAAAATGATCATGTCGATGTGAAAATTGAAAATGTTTCCAATGAAAGATTGACTTGTGACGATAGCAGTGTATATGAAGAACAGCCTCAAAAACCACATGAAATTTATTTTAATGATGAAGATTTCGAACAAGATGCTTCTATTTCAACCATGGAAGACGAAATGGAATTCGAAGAACAGAAGCCTGATATTGAGAGTTTAAAAATATAA
- Protein Sequence
- MALRVTATTRFCLNCKINSDDNAGKKFHEIFDDVGLELQLPSLVETFFHIDVKNKDKQHLCDDCVNRLIELYDMVVHTNDKSKTNNLKKKKECSNNEESSKYLQIESRNFRYELENDYKPFAIVQNNTQVTLPKNNYIECTNFETSVSTQGETALEIHKENKSEDKDRTEYENIEDVGHFVNKNRFATFTLQRNKISSDIGNYFPKEYFDQNGEKDLSQDFEISLPSGGKKDKKSDELEFNEHIEFIIDDGVQNVKINKQSNKKIPVNACENEDETLAAYTPNKIHNENEGRENLYVEEVDDRSNQGINSCDSNSLLEELEISKEKEALLLNVSSSAKDFNNREHIDTYDFIEQEGITDDTYSLEEEDLIAETILSDEFDQVDLNWYLDTVLLTKFEDLQLNWDVECKLCLEKYNSFGELLKHQCMAEFEREQQLSCIIKDCEEDAKDLPTLARHLILTHYDKLESTTIHGKCKDCQKTFSSVLDFNKHSCCRKIKRKTGTPNYCKYCDLNFQSFKRYVFHTQFHLKNHRPKICLLCGDLFNNSNDFFEHTQYKHNPKTASACERCDRFFNDIQAFNYHMKIHDDSKYLYECARCPKKYTAKFGLIQHMDISHNNKFNAFKCEYCPKKFGYKKVYINHVKSHATDAKVQAFICSRCGLITNKMEIIKDHIESDNKSPCFSSPVDKKILGLCYSCVNCSLDFCTIKHLKDHRLSDTHSDDLFHCGLCRKSFNTFHHMRNHLTKHKNFEEWQKLFPITKHFVCNVEDCEEFYSTWVSLYQHKKRLHKTNEETNLSTEFKCQFCQQSYSLKHSLSVHVTRSHINAKIKCSYCMRSFNSQIHLQKHIVKSHIPVECDICFKKFKCRLYLESHIMNLHEKKVHKNNNHKCKLCNFVTIYPASLKMHMEIHNNRLKFKCFTCYKLFGSKPQLESHVKKHLNKNKYSCARYLKESGCNASFLTYNLLKKHAHTKHKTSSFSINLKREEHRKNDHVDVKIENVSNERLTCDDSSVYEEQPQKPHEIYFNDEDFEQDASISTMEDEMEFEEQKPDIESLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -