Pame027845.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000499.1:1561008-1579375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.12 13 7.7 2.0 2 19 308 325 307 327 0.95 2 16 4.7 5.3e+02 2.6 1.6 2 23 340 361 340 365 0.84 3 16 0.073 8.3 8.3 0.5 3 23 370 391 369 391 0.94 4 16 0.0023 0.27 13.0 0.2 2 23 426 448 425 448 0.94 5 16 2.7e-05 0.0031 19.1 1.8 2 23 456 477 455 477 0.97 6 16 1.6 1.9e+02 4.1 0.1 1 20 486 505 486 507 0.88 7 16 4.5 5.1e+02 2.7 3.2 1 22 527 548 527 551 0.90 8 16 0.3 34 6.4 7.7 1 23 556 578 556 578 0.96 9 16 0.057 6.5 8.7 1.4 1 23 594 619 594 619 0.96 10 16 1.3 1.5e+02 4.4 1.5 2 23 631 653 631 653 0.94 11 16 0.49 55 5.7 4.8 2 23 661 683 660 683 0.95 12 16 0.00015 0.017 16.8 0.5 2 23 687 709 686 709 0.97 13 16 0.14 16 7.4 6.0 1 23 715 738 715 738 0.97 14 16 0.0011 0.12 14.1 0.6 2 23 744 765 743 765 0.97 15 16 0.0016 0.19 13.5 2.5 1 23 771 793 771 793 0.96 16 16 5.3 6e+02 2.5 0.1 6 23 810 828 807 828 0.87
Sequence Information
- Coding Sequence
- atgattgaacgccaaacgtcaagaaagataaaagtgttaagaagcgataatggtggtgaattcgtgaatggacaatttaatgaatatttggaacaaaacggtatagttcgggaattgacggtgccgtatacgcctcaacaaaacggcgtggccgaacgggctaaccgtacaattgtcgaaatgtcgcgggctatgttacttgaatccggtttggatgaatcgttatgggctgaggctgttgcaacggcagtttatattcgaaaccgctcacctacaaaaatgattggggacgctactccttatgaagtattcactggtaagaaaccttctgttaaacattttcgagtttttggctcagtggccgtggctttggacaagagggtccatcaaaagtttcaaccaaagggaagtgagtacataatggtaggttactcattaacctcaaaggcttatcgactatatgatgctaagaaacgtgtggttttagaaaaacgtgatgtGATGTTTATGGAACCTGTAAAAGTAAATACTGAGGAAACTGTTGATGTGGTTGATTTTATTGTGGCCAGGGATATAGATGAATCTAATAACTGTAACGAAAATCCAGAATCATTGGATGTAGATTCTAGCGAGGATGAGTTCTTTGGATTCGATGATTATTCAAGTATTGAAGAATGCCGTAATAGTAACAAGGATACAAAAGTATCAAATGAAAACGAGAACGTTgctcaaTTATGCCTGCAAAAATATTTCTCCTTTGAGGAACTATTAAATCATCAGTGCTTGGCAGAATTCGAAAAGGAGCAAACATTGGCTTGTATTATTAAAGATTGCGAAGAAGATGCAAAAGATTTACCAACTTTAGCAAGACACTTAATACTAAGGCATTATGATAAATTAGAAAGTACCGCCATTCATGGAAAATGTAGAGATTGCCAACAAACTTTTTCAAGTGTTATAGATTTTAATAAGCACTCTTGTTGCCGAAAATTGAAACGAAAAACTGGTACACCAAATTATTGTAAATATTGCAATTTGAATTTTCCATCTTTCCAAAGCGTTGTCTTTCACATGCAGTTCCATTTAAAAGACCACAGGCCAAAAATTTGCTTATTATGTGGTGATATATTCAATAATTCTGATGATTTCTTTAAACATACTCAATATACACATAATCCTAAAACTGTTTCGGCGTATGAAAGATGTGACCGCCTTTTTAATTATATACAAGCTTTTAATAATATGGAAAACCATGATGGTTCTAAATATCAATTAGAATGCGCACTTTGTCCAAAAACGTATACTTCTAAATTAGGTTTTACTCAACATATGGATATTTATCATAACATCAAATTGAATGCCTTACAATGTGAATATTGTCCAAGAAACTTTAGTAATACCAATTCATATCGTAATCATATGAAATCTCATGCTACAGATGCCAAAGTACAAACATTTATATGCTCAACATGTGGTTTAACAACTAATAAAATGGAAATGATAAAGGATCATATTGAGTCAGATAATAAATCTCCTTGTTTTTCATCGCCGGTTGACAAGAAAATTTTAGGTTTGTGTTATTCATGTGTAAATTGTTCCTTAGATTTTTACACAATGAAACATGTTAAAGATCATCATTTAAGTGATAGTCACAGTAATGATTTATTTCATTGTGGCTTGTGTAGAAAAAGTTTCAATTCTTTTCGCCACATGCGTAATCATTTTATTAAACACAAGGATTTAAAAGAATGGCAGAAATCATTTCCAATAACTAGACATTTTGTATGCAATATAAAGGATTGTACAAAGTTTTATGCAGCTTGGGTCTCTTTATATCACCACAAAAAACGTGTTCATAAAAGTGAAGAAGAAACAAATTCATCCACAAATGAATGCCAATTTTGTCATAATTTGTACTCTTCACAACAGTCTCTGTCTGATCATGTAGCTAGAAGTCATAACAATGTTTTAGCAAAAATTAAATGTTCTCATTGCATACAAAGTTTTAATTCCGAAAATCGTTTACAAAAACATATTGATAAATGTCATATACCCGTTGAATGTGATATCTGTTTTAAGCAAATATCAAATCGACGCAATTTACAAACACACATGAATACCATACATTATAATAGAAAGCGTTATTCTTGTAAACATTGCCAAAAGGGATATTTTACCAAGAAAGAAAGAACTGTGCATGAAAAGAAATTTCACCCTAAAAAAAATTTGAAATGTAAATTATGCAATTTTGTTACCACTTATCCGAAATCTTTGGAAATTCATATGGACAAACATAATAATCGGCTTAAATTTAAATGTTCAAGATGTGGCAAATCTTTTGGACGCAAACAAAAATTAGAGTTTCACTTGGAAAGACATCAAAATAACAAAGACTTCATTTGCGCCCGTTATTTGAATGGAAGTAGCTGTGATGCTGCTTTTTTGTCTTTTAATCTTCTGAAAAAACATATAGAAACTAAACATAAATACTCAAGTTTTAGTATTGATTTAAAAAGAGAAAAACTTCGAAAAAAAGATCATGACGATGTGCAAATTGAAAATGTTTCCGATGAAAGATCGACTTGTGACGATAGCAGTGTATATGAAAAACCGCCTCAAACATCATATGAAATTTATTTTATTGATGAAGATTTCGAACAAGATGCTTTTATTTCAACCTTGGAAAACGACATGGAATTCGAAGAACAGAAACCTGATACTGAGAGTTTAAAAATATGA
- Protein Sequence
- MIERQTSRKIKVLRSDNGGEFVNGQFNEYLEQNGIVRELTVPYTPQQNGVAERANRTIVEMSRAMLLESGLDESLWAEAVATAVYIRNRSPTKMIGDATPYEVFTGKKPSVKHFRVFGSVAVALDKRVHQKFQPKGSEYIMVGYSLTSKAYRLYDAKKRVVLEKRDVMFMEPVKVNTEETVDVVDFIVARDIDESNNCNENPESLDVDSSEDEFFGFDDYSSIEECRNSNKDTKVSNENENVAQLCLQKYFSFEELLNHQCLAEFEKEQTLACIIKDCEEDAKDLPTLARHLILRHYDKLESTAIHGKCRDCQQTFSSVIDFNKHSCCRKLKRKTGTPNYCKYCNLNFPSFQSVVFHMQFHLKDHRPKICLLCGDIFNNSDDFFKHTQYTHNPKTVSAYERCDRLFNYIQAFNNMENHDGSKYQLECALCPKTYTSKLGFTQHMDIYHNIKLNALQCEYCPRNFSNTNSYRNHMKSHATDAKVQTFICSTCGLTTNKMEMIKDHIESDNKSPCFSSPVDKKILGLCYSCVNCSLDFYTMKHVKDHHLSDSHSNDLFHCGLCRKSFNSFRHMRNHFIKHKDLKEWQKSFPITRHFVCNIKDCTKFYAAWVSLYHHKKRVHKSEEETNSSTNECQFCHNLYSSQQSLSDHVARSHNNVLAKIKCSHCIQSFNSENRLQKHIDKCHIPVECDICFKQISNRRNLQTHMNTIHYNRKRYSCKHCQKGYFTKKERTVHEKKFHPKKNLKCKLCNFVTTYPKSLEIHMDKHNNRLKFKCSRCGKSFGRKQKLEFHLERHQNNKDFICARYLNGSSCDAAFLSFNLLKKHIETKHKYSSFSIDLKREKLRKKDHDDVQIENVSDERSTCDDSSVYEKPPQTSYEIYFIDEDFEQDAFISTLENDMEFEEQKPDTESLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -