Basic Information

Insect: Pollenia amentaria
Gene Symbol: grau
Assembly: GCA_943735935.1
Location: CALSEV010000098.1:2396452-2399791[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.8 8.9e+02 1.9 4.8 2 23 283 305 282 305 0.95

2 10 0.16 18 7.3 1.9 6 23 314 331 314 331 0.96

3 10 0.0036 0.41 12.4 2.9 1 23 337 359 337 359 0.98

4 10 0.00069 0.078 14.7 2.7 1 23 367 389 367 389 0.97

5 10 5.6e-06 0.00064 21.3 0.4 2 23 398 420 397 420 0.96

6 10 0.18 21 7.1 1.0 3 23 428 448 427 448 0.96

7 10 0.02 2.3 10.1 0.5 2 23 457 479 456 479 0.95

8 10 1.6 1.8e+02 4.1 0.8 1 23 487 510 487 510 0.87

9 10 1.3e-05 0.0015 20.1 3.5 1 23 516 538 516 538 0.98

10 10 9.5e-06 0.0011 20.5 3.1 1 23 544 567 544 567 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.8	8.9e+02	1.9	4.8	2	23	283	305	282	305	0.95
2	10	0.16	18	7.3	1.9	6	23	314	331	314	331	0.96
3	10	0.0036	0.41	12.4	2.9	1	23	337	359	337	359	0.98
4	10	0.00069	0.078	14.7	2.7	1	23	367	389	367	389	0.97
5	10	5.6e-06	0.00064	21.3	0.4	2	23	398	420	397	420	0.96
6	10	0.18	21	7.1	1.0	3	23	428	448	427	448	0.96
7	10	0.02	2.3	10.1	0.5	2	23	457	479	456	479	0.95
8	10	1.6	1.8e+02	4.1	0.8	1	23	487	510	487	510	0.87
9	10	1.3e-05	0.0015	20.1	3.5	1	23	516	538	516	538	0.98
10	10	9.5e-06	0.0011	20.5	3.1	1	23	544	567	544	567	0.98

Sequence Information

Coding Sequence: ATGAAAGGCTGCTTGTTATGTCTAAAAATTAGACAAGATTCGGTTGGTAGTATACAAGTAAACTCGATAAAATGGCAAGAATTAAACGTGCAAAATTTAATTGTAAAACATTTTTGGCCAATGGATGCATTTCAGTCATACGGTTCTTGGCTTTGCACTGGTTGCTGGCAAGAATTGTATGATTTTCACAAATTTTATATTCGTGTGGAAGAAGCTCATTCAGAATTGGGCTTATCTGTAAAGAAAGTTGAATCGATCAGTATAAAAATTGATGAAATACAAAACGAACAAGATTTCAAGCCACCTATAGAGAATATAACTTTCGACGAAACTCATTTTGAACCTGAGATTTCTATAAAAGAATCTCTTCGTAGTACAAAACTTGTAGAGGAAGAGGATCTTGTTATCAAAGAAGAACAAAATGAGGAAGCTTTGGTTGAAGAAACTGTACCACTAACTAGAAATAAAAAAGCTCGACAGGTTAAAATAGTTGAAGATAATAGTGAAAGTGTTGCTGAAGACCCCTTAAGTAAAAAGAAACAATTCCGAAAAAGTTCTGCAAGAAAAACTAAATGTACAAAAGTAAAAGAATCTAAAAAATTGAGTGAAAATTCTGAACCAATATCTGTAAAAGCTGCAAAGGAAGAGGAACAAAATGAAATAAAAGATGATCGTGATACAACAGAAATGAGTCAAGAGGAACCAAATTATGTTGACAGCGATACAGATTCAAATTACGAGCCAGATAAGGAATTGTCTGCACCAAATAAAAAAAAATCCTCAGGAAAATCTTTCAAGAGCACAAATCATGCAAACGACAAGTTTTTGAAAGAAAACTTTAAAATCACCTgcagtttttgtcaaatacaaactgaaacatttcatggactttgcaaacactttaaatcggaacacaaacaaattggttttgctatttgctgtaagaaaaaattctatagacgaagtcttcttgtcgaccatgttcatcagcatgttaatccgaattatttcaagtgcactatttgcgataaagtaatggctgatcgcaaatgtttaaatatgcacaataaaacgcataatgataaaaaagaaaaggtacatccttgtgatatttgtaataagaaattcagtatgtatatgtcgttaaaactacataaaatgtcccatttgtcggaggatgaaaaacacgttccatgtacaaattgtgacaaaaaatttgctagtaagtcgctactttccaatcacgtacgatcggtacatttaaagaaatatataaatatttgcgatatttgtggcagatcgataagatgcaaagaagtctttgaacgtcatatgctgcagcatgagggtaagccattacctacggttagttgcgacgtttgtggattactattggcgaacaaacacagtttaaaacaacacaaacttatggtgcatccagagggaggaaaaaaggagtttacttgtcctgtttgtgcaaaaatttcaccaaatttaaaagctcacaagaaacatgtacaatataatcatgaatggggttacgaccacaaatgcacaatgtgcgaaaaagcttttaagacagcgcacactttaacggaacatatggcttctcataccggtactatattatacacctgtccctggtgtcctaaaacctttaattcaaatgctaatttccacagtcatcgtaaaaaaagtcatcgtaaagaatgggaagaggcaacgcgtaaaaaATATTCCGGCAATTTACCACCTAATTACAATCCACCGGCACCGGCGAACAATACTAACGATTGTGAGATACCTCATTGTATGCAATGA
Protein Sequence: MKGCLLCLKIRQDSVGSIQVNSIKWQELNVQNLIVKHFWPMDAFQSYGSWLCTGCWQELYDFHKFYIRVEEAHSELGLSVKKVESISIKIDEIQNEQDFKPPIENITFDETHFEPEISIKESLRSTKLVEEEDLVIKEEQNEEALVEETVPLTRNKKARQVKIVEDNSESVAEDPLSKKKQFRKSSARKTKCTKVKESKKLSENSEPISVKAAKEEEQNEIKDDRDTTEMSQEEPNYVDSDTDSNYEPDKELSAPNKKKSSGKSFKSTNHANDKFLKENFKITCSFCQIQTETFHGLCKHFKSEHKQIGFAICCKKKFYRRSLLVDHVHQHVNPNYFKCTICDKVMADRKCLNMHNKTHNDKKEKVHPCDICNKKFSMYMSLKLHKMSHLSEDEKHVPCTNCDKKFASKSLLSNHVRSVHLKKYINICDICGRSIRCKEVFERHMLQHEGKPLPTVSCDVCGLLLANKHSLKQHKLMVHPEGGKKEFTCPVCAKISPNLKAHKKHVQYNHEWGYDHKCTMCEKAFKTAHTLTEHMASHTGTILYTCPWCPKTFNSNANFHSHRKKSHRKEWEEATRKKYSGNLPPNYNPPAPANNTNDCEIPHCMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259278;
90% Identity: iTF_01238065;
80% Identity: -