Pame027847.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000499.1:1603016-1628603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.097 11 7.9 2.6 2 19 406 423 405 425 0.94 2 13 0.087 9.9 8.1 0.6 3 23 468 489 467 489 0.94 3 13 0.057 6.5 8.7 0.3 3 23 497 517 495 517 0.95 4 13 0.00043 0.049 15.3 0.6 1 23 524 547 524 547 0.96 5 13 0.0002 0.022 16.4 3.1 2 23 555 576 554 576 0.97 6 13 0.068 7.7 8.4 4.2 1 23 626 650 626 650 0.92 7 13 0.66 76 5.3 9.6 1 23 655 677 655 677 0.96 8 13 0.013 1.5 10.7 0.5 1 23 693 718 693 718 0.97 9 13 0.00063 0.072 14.8 3.7 2 23 761 783 760 783 0.96 10 13 0.00014 0.016 16.8 0.5 2 23 787 809 786 809 0.97 11 13 0.25 29 6.6 6.3 1 23 815 838 815 838 0.97 12 13 0.0011 0.12 14.1 0.6 2 23 844 865 843 865 0.97 13 13 2.4e-05 0.0027 19.3 2.7 1 23 871 893 871 893 0.98
Sequence Information
- Coding Sequence
- ATGAACGGGGTTCATCCCCCGGACTATAACCGGTTTCGGGAACTTGATTTCTCTTCCGGGAAAAGTAGAACCATCAAAAACAAAAGACCTCGAACAGAGGATTTCGTTCCTCTTCCGGAAATAACACCGAACCAAGACAACCTCCCACGCTATTTGGTTGCATCGGCTATCTCTTTAAAGGAAAATGTACAGGTGTTACCGCTAGCTTCTCATAATGTTTTTCAAGTTGAAAGGGGACTAAACCATATCTCGCGTGACCGTCTAGAGGTCAAAGAGATGAAAAGTCGTGATCTACTAATTAAAGTTCCTTGTGTCAAAACTGCTGAAAAATTTCTTAAAGCTAATCTCATTGACTGTATTCCTGTAAAAATATATTTGCATAAATCTCTTAACACCACTCAAGGCCGTATTTTTTCAAGAAAAATAATGGAAATATCCGAAGAGGAATTATTGCAATCATTAAAAGAACAAAAGGTGGTAGAGGTTCGTAAAATAAACAAAAGGGAAAATGATAAAATGGTGGCTACAGCAAACAACAACACTACAACAACTGTACAAAATTCTACAACAACAGAAACCTCTACACTCACCAAAAATAAGCAAACAGAAAATCAAAACAAACATGCAGACAAGGCGAAACAAGCATCACACAACCCTTTTACAACAACCACAAATTCTCAGTCAAAAGACAACGACACCAGCTTTACAACTCAACCAACACAAATGCAATCAGAAATTAACAACACTGAATTTTTAAATGAAACTCCTACACTTTTACAAACTCAAAATTCTCTATCAACTATACAAAATTCTATATCTCAAATAATATCTCTTACTAATAATCAATCAAAACAAAATACCACAATAACAAATGATAAAAAAACCAATGATGACATTTTGGAAGATGAGAGTATTTTCATTGAAAGCAAAGATGGCAATTCTGATACATCTTTAAATGATTACGTTTTTTCGAACACAAACCAGGAAATACAAACGAACAAACAGATCAAAATACGAATTCACCATTTTTGCCTTGAAGAATATTACTCCTTTGAGGAACTATTAAAACATAAGTGCATGGCAGAATTCGAAAAGGAGCAAACATTTTCTTGTATTATTAAAGATTGCGAAGAAGAAGCAAAAGATTTACCAACTTTAGCAAGACATTTAATACTAAGGCATTATGATAAATTAGAAAGAATCCCCATTCATGGAAAATGTAAAGATTGCCAACAAACATTTTCAAGTGTTTTAGATTTTAATAAGCACTCTTGTTGCCGAAAAATAAAACGAAAAGCTGGTACACCAAATTATTGTAAATATTGCAATTTGAATTTTCCATCTTTCAGAAGAGTTGTCTTTCACATGCAGTTCCATTTAAAAGACCACAGGCCAAACATTTGTCTATTATGTGGTGATATATTCAATAATTCTGATGAATTCTTTAAACATACTCAATATAAACATAATCCTAAAACAGTTTTGGCGTGTGAAAGATGTGACCTCTTTTTTAATTATGTGCAAGCTTTTAATAATCATATGGGAAAACACGATGGTTCTAAATATCAATTTAAATGTGCACTTTGTCCAAAAACGTATACTTCTCAATTAGGTTTTACTCAACATATGGATATTTATCACAAAATCAAATTGAATGCATTACAATGTGAACATTGTCCAAGAAACTTTAGTAGTACCAATTCATATCGTAATCATATTAAATCTCATGCTAAAGATGCCAAAGTACAAACATTTATTTGCTCAAGATGTGGTTTAATAACTAATAAAATGGAAAGGATAAAGGATCATATTGAGTCGGATAATAAATCTCCTTGTTTTTCATCGCCGGTTGACAAGAAAATTTTAGTTTTGGGTTTTTCATGTGAAAATTGTTCCTTAGATTTTTGCACAATAAAACATCTAAAAGATCATCGTTTAACTGATAGTCACAGTGATGATTTATTTCATTGTGGTTTGTGTAGAAAAAGTTTCAATTCTTTTCACCACATGCGTAATCATTTTATTAAACACAAGGATTTCAAAGAATGGCAGAAATCATTTCCAATAACTAGACATTTTGTATGCACTATAGAGGATTGTGAAAAGTTTTCTCCAACTTGGGTCGCTTTATATCACCACAAAAGACGTGTTCATAAAACTGAAGAAGAAACAAATTCATCCACAGAGTTAAAATGCCAATTTCGTCCGAATTTGTACTCTTCACAACAGTCTCTGTCTGATCATGTAACTAAAAGTCATAACAATGTTTTAGCAAAAAATAAATGTTCTCATTGCCTACAAAGTTTTAATTCCCAAAATCAACTACAAAAACATATTGATAAATATCATATACCCGTTGAATGTGATATATGTTTTAAGCAAATATCAAATCGACGCAATTTACAAACACACATGAATACCATACATTATAATAGAAAGCGTTATTCTTGTAAACATTGCCAAAAGGACTATTTTACCAAGAAAGAAAGAACTGTGCATGAAAAGAAATTTCACCCTAAAAAAAATTTGAAATGTAAATTATGCAATTTTGTTACCACTTATCCGAAATCTTTGGAAATTCATATGGACAAACATAATAATCGGCTTAAATTTAAATGTTTAAGATGTGGCAAATCATTTGGACGCAAACAAAAATTAGAGTCTCACTTGAAAAGACATCAAAATAACAAAGATTGA
- Protein Sequence
- MNGVHPPDYNRFRELDFSSGKSRTIKNKRPRTEDFVPLPEITPNQDNLPRYLVASAISLKENVQVLPLASHNVFQVERGLNHISRDRLEVKEMKSRDLLIKVPCVKTAEKFLKANLIDCIPVKIYLHKSLNTTQGRIFSRKIMEISEEELLQSLKEQKVVEVRKINKRENDKMVATANNNTTTTVQNSTTTETSTLTKNKQTENQNKHADKAKQASHNPFTTTTNSQSKDNDTSFTTQPTQMQSEINNTEFLNETPTLLQTQNSLSTIQNSISQIISLTNNQSKQNTTITNDKKTNDDILEDESIFIESKDGNSDTSLNDYVFSNTNQEIQTNKQIKIRIHHFCLEEYYSFEELLKHKCMAEFEKEQTFSCIIKDCEEEAKDLPTLARHLILRHYDKLERIPIHGKCKDCQQTFSSVLDFNKHSCCRKIKRKAGTPNYCKYCNLNFPSFRRVVFHMQFHLKDHRPNICLLCGDIFNNSDEFFKHTQYKHNPKTVLACERCDLFFNYVQAFNNHMGKHDGSKYQFKCALCPKTYTSQLGFTQHMDIYHKIKLNALQCEHCPRNFSSTNSYRNHIKSHAKDAKVQTFICSRCGLITNKMERIKDHIESDNKSPCFSSPVDKKILVLGFSCENCSLDFCTIKHLKDHRLTDSHSDDLFHCGLCRKSFNSFHHMRNHFIKHKDFKEWQKSFPITRHFVCTIEDCEKFSPTWVALYHHKRRVHKTEEETNSSTELKCQFRPNLYSSQQSLSDHVTKSHNNVLAKNKCSHCLQSFNSQNQLQKHIDKYHIPVECDICFKQISNRRNLQTHMNTIHYNRKRYSCKHCQKDYFTKKERTVHEKKFHPKKNLKCKLCNFVTTYPKSLEIHMDKHNNRLKFKCLRCGKSFGRKQKLESHLKRHQNNKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -