Pame027848.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000499.1:1646259-1676911[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.026 3 9.7 2.5 2 19 619 636 618 638 0.94 2 15 5.3 6e+02 2.5 0.5 3 23 681 702 680 702 0.93 3 15 0.072 8.2 8.3 0.4 3 23 710 730 708 730 0.95 4 15 3.9e-05 0.0044 18.6 0.9 1 23 737 760 737 760 0.96 5 15 0.00032 0.036 15.7 2.6 2 23 768 789 767 789 0.97 6 15 0.11 12 7.8 3.9 1 22 839 860 839 863 0.91 7 15 0.039 4.4 9.2 6.0 1 23 868 890 868 890 0.94 8 15 0.46 52 5.8 0.2 1 23 906 931 906 931 0.96 9 15 0.18 20 7.1 2.1 1 23 943 966 943 966 0.96 10 15 0.00049 0.055 15.2 2.8 2 23 972 994 971 994 0.95 11 15 3.2e-05 0.0036 18.9 1.9 2 23 998 1020 997 1020 0.96 12 15 2.4 2.7e+02 3.6 6.3 1 23 1026 1049 1026 1049 0.95 13 15 0.00011 0.013 17.1 0.7 1 23 1054 1076 1054 1076 0.98 14 15 0.00067 0.076 14.7 3.4 1 23 1082 1104 1082 1104 0.98 15 15 2.9 3.4e+02 3.3 0.2 5 23 1120 1139 1110 1139 0.86
Sequence Information
- Coding Sequence
- ATGGATGTTAGAGTTTCAACAACCATCAGAGTTTGCTTATATTGCAAAATAAAATCGGATGCTAATGCTGGAAAGGAATTTCATGAAATCTTTGATGAAGTGGGTCTAGAATTGCAGTTACCCTCCTTAGTCAAAACATATTTTCGCATTGATTTGAACGAAAATAGTAAACAATATCTTTGTTCTGATTGTGTTAATCGTTTAATAGAATTATATGATTTGGATGAGCACGCCAAAGAGGAAAGTTGTAAGACAAATTTTTTAAAAAAATACCCGGAATGTAGTAATAATGAAGAAAGTAGTAAATATCTCCAAAATGAAAGTAAACATCTTAAATACGAAGATGAAAATATCCATAAACCTTTTGCAATTAGTCAAAATAATACTCAAGTTACTTTACCCAAAAGTAATTATATTGAATACACAAACTTTGAAATTTTAGTTTCACCACAAGGAGAAAACGCTATAGAAACTGAAAAACAAAATAAATCTGAAGATAATGATTGTACGGAATACGTAAATATTGAATATGTAAGATATTTTTTTGACAAAAACAGACCACCTTTTACACAGCAACATAACCAAAGTAGTGTTGATATCGCTGAGGATTTCCTAGAAGAGGATTTTGACCAAACCAGTGAAAGGGAAGATTCACAAGATTTCAAAATTTCGTTATCGTCTAGTGCAATAACAACTGACAAACCAGAAGAACTAGAATCCAATGCACATATTGAATTTATCATCGATGATGAAAACCAAAATGTGGAAATAAACGAGCAGTCTAATACAAACATAATTGACTCCAAAAAATTAGAAACAAGAGAAGAATACCAAATTGAGTTAAATGAGGAAATCGAAGTACTTTCCGAAGTTGAAAGTGAAACAAAAGAAAGTGTTTTTTTGTTCAGTGACCATAATGATTATGTCGAAGAAAATTTATGCGAAGATGAAGATGTAGAAGCTTACACACCAAACAAAACGCATAATGAAAATGAAGTTCAGAAAGATTTATATGTTGAAGAAGTTGAAGACTTCTATGAAGAAGAGGAATTATCTTCATATTATGAAGAAGAAAGTTTAAATCTAGTCATAAAAAGTGGCGATTCAAACTCATTACTAGCAGATAGTAAACTTACCGAAGAAAAGGAAGATTTATTATTAAATTCGAATAGTGCAACAGAATTTAATAATACAGAACACATTGATGCAGATTATTTTATTGGAAAGGAAGAAATTTCTGATGATACATATTCATTAGAAGAAGAGTATTTAATAGAAGAAATTATTTTATCTGAGGAATATGATCAAGTTGATTTAAATGAGTATTTGGATAAGGTACTAATAACCAAATTTCTAGACTTACAGTTAAATTGCGAAATGGAATGTAAAgcttatcgactttatgatgctaagaaacgtgtggttgtagaaaaacgtgatgtGATGTTTATGGAACCTGTAAAAGTAAATACTGAGGAAACTGTTGATGTGGTTGATTTTATTGTGGCCAGGGATATAGATGAATCTAATAACTGTAACGAAAATCCAGATGCAGATTCTAGCGAGGATGAGTTCTTTGGATTCGATGATTATTCAATTATTGAAGAATGCCGTAATAGTAACAAGGATACAAAAGTATCAAATGAAAACGAGAACGTTgctcaaTTGTGCCTTGAAAAATATTACTCCTTTGGGGAATTATTAAATCATGCATGCATGGCAGAATTCGAAGAGGAGCAACAAACGTTTTGTATTATTAAAGATTGCGAAGAACATGAAAAAGATTTATCAACTTTAGCAAGACATTTAGTACTAAAACATTATGATAAATTAGAAAGTACGGCCATTTATGGCAAATGTACAGATTGTCAAAAAACATTTTCAAATATTTTAGATTTCAACAAGCATTCCTGCTGTCGAAATATAAAACGAAAAACTGGTGCACCAAATTATTGTAAATATTGCGATTTGGATTTTCAATCTTTAAAAAGATATGTGTTTCATATGCAGTTCCATTTAATAAATCACAGGCCAAAAATTTGCTTATTATGTGGTGATTTATTCAATAATTCTAATGATTTCTTTGAGCATACTCAATATAAACATAATCCTGAAACTGCTTTGGCGTGTGTAAGATGTGACCGCTTTTTTAAGGATATAAAAGTTTTTAATAATCATATGGAATTGCATGAAGATTCAAAGTATCAATATGAATGTACACTTTGTCCAAAAAAGTATACTAATAAATTTGGTTTAAATCAACATATGGATATTTATCATAACAACAAATCTAATGCCTTACAATGTGAATATTGTGCAAAAGAATTTGTTCATAAAACATCATATCGCAATCATATTAAATCTCATGCTACAGATGCCAAAGTACAAACATTTATATGTTCAACATGCGGTTTGATAACTAATAATATGGAAATAATAAAGGATCATATTGAGTCAGATAATGAATCTCCATGTTTTTCATCGCCGGTTGACGAAAAAATTTTAGGCTTGGCTTATTCATGTGAAAATTGTTCCTTAGATTTTTGTACAATAAAACATCTAAAAGATCATCGCTTAAGTGATAGTCACAGTGATGATTTATTTCATTGTGGTATGTGTAAAAAAACCTTCAACACTTTACGTCATATGCGTAATCATTCCATCAATCACAAGGATTTCAAAGAATGGCAGGAATCATTTCCAATAACTAGACATTTTGTATGCAATATAGGGGATTGTCAAGAATTCTATCCAATTTGGACCTCTTTATATTATCACAAAAAACGTCCTCATAAAACAGAAGAAAAAACAAATTCTCCAACAGAGTTTAAATGCCAATTTTGTCAGCAGTTGTGCTCTTCAAAAATGTCTTTGGCTGTTCATGTAGCAAGAAGTCATAACAATGCAAATATTAAATGTTCATATTGCAAAAGAAATTTTAATTCCCAAAATTTTTTACAAAAACATATTGATAAATTTCATACTCCCGTTGAATGTGAAATCTGTTTAAAGAAATTTAAACATCGACGCAATTTAGAAACACACATGAATTCCGTACATAATAATATTAAGCGTTATTTTTGTAAACATTGCGAAAAGGGATATTTTCATAAGAATGAAAGAAATTTACATGAAAAGAAAGTTCACCCTAAAAATACTTTTAAATGTAAACTATGCAATTTTGTAACAACTTATCCGTCATCTTTGGAAATTCATATGGACAGACATAATAATCGGCTTAAATTTAAATGTCCAATTTGTAGCAAATCTTTTGGACGCAAACAACTATTAGAGTGTCACTTGAAAAGACATCAAAATAAAAAAGACTACAGTTGTGCCAGTTATTTGAATGAAAGTGGATGTGATGCCTCTTTTTTGACTTATAATTTACTGAAAACACATGCACAAACTAAACATGAAAACTCAAGTTTTAGTATTAATTTAAGAAGAGAAGAACAACGAAAGAAAGATCGTAATGTTGTGCAATTTAAAAATGTTTCCTATAAAATATTGACTTGTGACGACAGCAGTGAATATGAAAAACAGCCAAAAATATCGCAGGAAATTAAGTTTTATGATGAAGATTTCGAACAAGATGTTATTATTTCAACCTTGGAAAACGACATTGAATTCGAAGAACATAAACCTGATGCTGAGAGTTTAACAATATGA
- Protein Sequence
- MDVRVSTTIRVCLYCKIKSDANAGKEFHEIFDEVGLELQLPSLVKTYFRIDLNENSKQYLCSDCVNRLIELYDLDEHAKEESCKTNFLKKYPECSNNEESSKYLQNESKHLKYEDENIHKPFAISQNNTQVTLPKSNYIEYTNFEILVSPQGENAIETEKQNKSEDNDCTEYVNIEYVRYFFDKNRPPFTQQHNQSSVDIAEDFLEEDFDQTSEREDSQDFKISLSSSAITTDKPEELESNAHIEFIIDDENQNVEINEQSNTNIIDSKKLETREEYQIELNEEIEVLSEVESETKESVFLFSDHNDYVEENLCEDEDVEAYTPNKTHNENEVQKDLYVEEVEDFYEEEELSSYYEEESLNLVIKSGDSNSLLADSKLTEEKEDLLLNSNSATEFNNTEHIDADYFIGKEEISDDTYSLEEEYLIEEIILSEEYDQVDLNEYLDKVLITKFLDLQLNCEMECKAYRLYDAKKRVVVEKRDVMFMEPVKVNTEETVDVVDFIVARDIDESNNCNENPDADSSEDEFFGFDDYSIIEECRNSNKDTKVSNENENVAQLCLEKYYSFGELLNHACMAEFEEEQQTFCIIKDCEEHEKDLSTLARHLVLKHYDKLESTAIYGKCTDCQKTFSNILDFNKHSCCRNIKRKTGAPNYCKYCDLDFQSLKRYVFHMQFHLINHRPKICLLCGDLFNNSNDFFEHTQYKHNPETALACVRCDRFFKDIKVFNNHMELHEDSKYQYECTLCPKKYTNKFGLNQHMDIYHNNKSNALQCEYCAKEFVHKTSYRNHIKSHATDAKVQTFICSTCGLITNNMEIIKDHIESDNESPCFSSPVDEKILGLAYSCENCSLDFCTIKHLKDHRLSDSHSDDLFHCGMCKKTFNTLRHMRNHSINHKDFKEWQESFPITRHFVCNIGDCQEFYPIWTSLYYHKKRPHKTEEKTNSPTEFKCQFCQQLCSSKMSLAVHVARSHNNANIKCSYCKRNFNSQNFLQKHIDKFHTPVECEICLKKFKHRRNLETHMNSVHNNIKRYFCKHCEKGYFHKNERNLHEKKVHPKNTFKCKLCNFVTTYPSSLEIHMDRHNNRLKFKCPICSKSFGRKQLLECHLKRHQNKKDYSCASYLNESGCDASFLTYNLLKTHAQTKHENSSFSINLRREEQRKKDRNVVQFKNVSYKILTCDDSSEYEKQPKISQEIKFYDEDFEQDVIISTLENDIEFEEHKPDAESLTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -