Pame027833.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000499.1:1317662-1351153[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.4 6.2e+02 2.4 0.3 2 20 459 477 458 479 0.91 2 16 1 1.2e+02 4.7 2.9 2 19 525 542 525 544 0.93 3 16 9.5 1.1e+03 1.7 1.2 2 23 557 578 557 578 0.77 4 16 4.3 4.8e+02 2.8 0.5 3 23 587 608 586 608 0.93 5 16 0.017 2 10.3 1.4 2 23 614 635 613 635 0.95 6 16 7.8e-05 0.0089 17.7 2.1 1 23 642 665 642 665 0.96 7 16 7.7e-06 0.00087 20.8 2.2 2 23 672 693 671 693 0.98 8 16 1.4 1.6e+02 4.3 0.0 1 21 702 722 702 723 0.91 9 16 0.083 9.5 8.1 3.5 1 22 743 764 743 767 0.91 10 16 0.07 7.9 8.4 7.4 1 23 772 794 772 794 0.96 11 16 0.21 24 6.8 0.2 1 23 810 835 810 835 0.96 12 16 0.51 58 5.7 2.3 1 23 847 870 847 870 0.96 13 16 0.0072 0.82 11.5 2.2 2 23 876 898 875 898 0.93 14 16 0.0017 0.2 13.4 1.7 2 23 902 924 901 924 0.95 15 16 1.6 1.8e+02 4.1 1.2 1 23 953 975 953 975 0.95 16 16 2.1e-05 0.0024 19.5 2.9 1 23 983 1005 983 1006 0.96
Sequence Information
- Coding Sequence
- ATGGCGCTAATAGTTCCAACAACCACAAGAGTTTGTTTAAATTGCAAAATAAACTCTGATACTAATGCTGGAAAGGAATTTCATGAAATATTTGATGATGTAGGCCTAGAACTGCAATTACCCTCCTTAATCGAAACTTTTTTTCACATTGATTTAAAAAAAAAGGATAAACAACATCTTTGTGATGATTGTGTTAATCGTTTAATAGAGTTATATGATGTGGTGGTGCACACCAATGATGAAAGTTGCAAGACAAATAATTTAAAAAATAAGCCGGAATGTAGTAATAAAGAAGGAAGTAGTAAATACCTCCAAAATGAAAGGAGAAATTTTAGATACGAAGATGGTAACTTGCATAAACCTTTTGTTATTGATCAAAAAAATGCTCAAGTTAATTTACACAAAAGTAACTCTATTGAATACACAAACTTTAAAACGTTTGTTTCAACACAAGGAGAAAATGCTATAGAAATTAATAAACAAAGCAAATCTGAAGATATACATCGAACAGAATATGAAAATATAGAAGATGTAGGATATTTTTTTAACCAAAACCGCTCTGCGCCTTTTACCCAGCAACAAAACCAAAGTAGTAATGATATTACTGAGGATTTCCCTGTAAAGGATTTTAAACAAACCGGTGAAAGGGAAGTTTCACAAAATTTAAATATGTCATCGTTTAGTCCAAAATCAGAAAAACGAGAATCCAATGAACATATTGAATTTATCAGCGATGATGAAAACCACATGGGGATTAACAAACAGTCTAATACAAACATCACATTTGGTTCTAAAAAATTTGAAACAAAAGAAAGGGAAGGTTCACAAGATTTCATTATTTCGTTATCGTCTAGTGAAAACTCTAATGAACTAGAATCCAATGAAAATATTGTTTTTATCAGCGATGATGAAAACGAATATGTGGAAATATACAAACAGTCTAATACAAATAACATAGTTGATCTATGCGAAGAGGAAGATGAGGCTGTAGAAGTCTACATACCAAACAAAATTCATAACAAAAATGAAGATCAGGAAGATTCATATGTTGTAGAAGTCGATAATCTTTCAAATCAAGTTATAAGCAGTGACGATTCAAACTCATTACTAGAAGAACTTAAAACAACCGAAGAAAATAAGGCTTCATTATTAAATGTAAGTTGTAGTGCAATCGACTTTAATAATATAGAACACACCGATACAGATGATGTTATTAAACAGGAAGACATTTCTATTGAAACTTGTTCATTGGTAGAAGATTGTTTTAAAGAAGAAATTATTTTGTCTAAGGAATATGATCAAGTTGATTTGGATGAGTATTTGGATAAGGTACTAATAACAAAATTTCAAGACTTGCTGTTAAATTGGGAAATAGAATGTAAATTGTGCCTTGAAAAATATTACTCGTTTGTGGAACTACTAAATCATGCGTGCATGGCAGAATTCGAAAAGAAGCAACAATTTTTTTGTATTATTGAAGATTGCGAAGAAGATGCAAAAGATTTACCAACTTTAGCAAGACATTTAGTATTAAAACATTATGATAAATTAGAAAGTACCGCCATTTTTGGTAAATGTACAGCTTGTCAAAAAACATTTTCAAGTGTTTTAGATTTTAATAAGCACTCTTGTTGCCAAAATATAAAACGAAAAACTGGTGCTCCTAATTATTGTAAATATTGCGATTTGGATTTTCAATCTTTAAAGAGATATGTGTTTCATATGCAGTTCCATTTAAAAAAACGCAGGCCAAAAATTTGCTTATTATGTGGTGATTTATTCAATAATTCTAATGATTTCTTTGAACATACTCAATATAAACATAATCCTTTGGCATTGACGTGCTTAAGATGTGACCGATTTTTTAAGGATAAACAAGTTTTTAGTAATCATATGGAATTGCATGAAGATTCAAAATATCAATATGAATGTGCACTCTGTCCAAAAAAGTACACTCATAATTTTACTTTAAATCGACATATGGATATTTATCATAACAAAACGAATGCCGTGCAATGTGAATATTGTCCAAAAAAATTTTCTTATAAAACTTCATATCGTAATCATTTAAAAACTCATGCTTCCGATGCCAAAGTACAAACATTTATATGCTCAACATGTGGTCTAATAACTAAGAATATGGAAATGATAAAGGATCATATTGAGTCAGATAATAAATCTCCTTGTTTTTCATCGCCAGTGGACGAGAAAATTTTAGATTTGGGTTATTCATGTGAAAATTGTTCCTTAGATTTTTGTACAATAACACATCTTAAAGATCATCGGTTAAGTGATAGTCACAGTGATGATTTATTTCATTGTGGTATGTGTAGAAAAAGCTTCAATACTTTGAAGCACATGCGTAATCATTCCTCTAAACACAAGAATTTCAAAGAATGGCAGGAATCATTTCCAATAACTAGATATTTTGTATGCAATATAGGGGATTGTGAAGAGTTTTATTCTATTTGGACTTCTTTATATTACCACAAACAACGTCCTCATACAACTGAAGAAAACGCAAATTCTCCAACAGAGTTTAAATGCCAATTTTGTCAGCGGCTGTACTATTCAAAAATGCGTTTGGCTTTACATATAACTAGAAGTCATTATAATGTAAGCAGCAAATGTTCTTATTGTAAGAAAAATTTTAAATCCCAAAATATTTTACAACAACATATTGATCAATTTCATACACCCGTTGAATGTGATATCTGTTTAAAGAAATTTAAACATGGACGCACTTTAAAAAAACACATTAGTTCCATACATAATAATAAAAATATCGAAAAGGGAAATGATGTTCATCAGAAATTAAGATATTTACATGAAAAGAAAGTTCACCATAAAAATACTTTTATATGTAAATTATGCAATTTTGAAACCACTTGTCCGGCTTCTTTGAAAATTCATGTGGACAAACATACGAGTAATAATGGGCTTAAATTTAAATGTTCAATTTGTAGCAAATCATTTGGACGCAAACCAACATTAGAGGATCACCTGAAAAAACATCACAATAAAAGGTAG
- Protein Sequence
- MALIVPTTTRVCLNCKINSDTNAGKEFHEIFDDVGLELQLPSLIETFFHIDLKKKDKQHLCDDCVNRLIELYDVVVHTNDESCKTNNLKNKPECSNKEGSSKYLQNERRNFRYEDGNLHKPFVIDQKNAQVNLHKSNSIEYTNFKTFVSTQGENAIEINKQSKSEDIHRTEYENIEDVGYFFNQNRSAPFTQQQNQSSNDITEDFPVKDFKQTGEREVSQNLNMSSFSPKSEKRESNEHIEFISDDENHMGINKQSNTNITFGSKKFETKEREGSQDFIISLSSSENSNELESNENIVFISDDENEYVEIYKQSNTNNIVDLCEEEDEAVEVYIPNKIHNKNEDQEDSYVVEVDNLSNQVISSDDSNSLLEELKTTEENKASLLNVSCSAIDFNNIEHTDTDDVIKQEDISIETCSLVEDCFKEEIILSKEYDQVDLDEYLDKVLITKFQDLLLNWEIECKLCLEKYYSFVELLNHACMAEFEKKQQFFCIIEDCEEDAKDLPTLARHLVLKHYDKLESTAIFGKCTACQKTFSSVLDFNKHSCCQNIKRKTGAPNYCKYCDLDFQSLKRYVFHMQFHLKKRRPKICLLCGDLFNNSNDFFEHTQYKHNPLALTCLRCDRFFKDKQVFSNHMELHEDSKYQYECALCPKKYTHNFTLNRHMDIYHNKTNAVQCEYCPKKFSYKTSYRNHLKTHASDAKVQTFICSTCGLITKNMEMIKDHIESDNKSPCFSSPVDEKILDLGYSCENCSLDFCTITHLKDHRLSDSHSDDLFHCGMCRKSFNTLKHMRNHSSKHKNFKEWQESFPITRYFVCNIGDCEEFYSIWTSLYYHKQRPHTTEENANSPTEFKCQFCQRLYYSKMRLALHITRSHYNVSSKCSYCKKNFKSQNILQQHIDQFHTPVECDICLKKFKHGRTLKKHISSIHNNKNIEKGNDVHQKLRYLHEKKVHHKNTFICKLCNFETTCPASLKIHVDKHTSNNGLKFKCSICSKSFGRKPTLEDHLKKHHNKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -