Pame007913.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- Zbtb41_1
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000112.1:163483-171939[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.023 2.6 9.9 1.1 2 23 237 259 236 259 0.93 2 10 2.2e-05 0.0025 19.4 2.6 1 23 266 289 266 289 0.98 3 10 0.013 1.5 10.6 0.1 1 23 294 319 294 319 0.96 4 10 0.0013 0.15 13.8 3.9 1 23 349 371 349 371 0.96 5 10 0.0022 0.25 13.1 0.4 1 23 377 399 377 399 0.97 6 10 0.00021 0.023 16.3 0.5 1 23 406 429 406 429 0.97 7 10 0.12 14 7.6 3.3 1 17 435 451 435 457 0.78 8 10 1.2e-05 0.0014 20.2 0.2 1 23 463 485 463 485 0.95 9 10 0.033 3.8 9.4 1.4 1 23 492 514 492 514 0.93 10 10 2.6e-05 0.003 19.2 2.3 1 23 520 542 520 542 0.98
Sequence Information
- Coding Sequence
- ATGAGCACTATTAACCATACAAATTTGAGAGAGCTATGTCGTGCCTGCTTGAGAACATTGAAACACAACAATTTAAATTCAAATGATACTAATGGTGCGGATACTGCATGCGAAGCAGGAACTGGATCCACGTTAAAAAGTTTATTATTGCCAAATTTATGTAAATTATTTATGTTCCTAACCACATATGATGTAAATCACGAGTATGATGATTTCCCAAAACTGTTGTGTGAGTGGTGTTACGGCCGTCTCTTGGATTATGATGAATTTCGAAAGTTGGCTGTAAGAAGTACTGAAATGTTGTATGAACAATGGAATGCTAATAACGATAAAGAGTCGTCAACTGAAGTAGAGGGTATAGAAACTAAATCATCTATCCAACCACTTGAAAGTTTTAAGCAGGAAGATAATTTAGATGATAATGATGATAATAAATTGCTTTTACCAGAATTAGCTAATATGCCTTTATATATTAAACCTGAACCTGTTTTTGAGGCAATGGATACCCAATTTATTTTGCCATCTTATCTGGAGGAGGGCGAAGTGAATAGAGATCAATTGTCATATGATTCTTACGACACCAAAGAGGATGCTGATGGTGAGGAGTTACTCCTAGAGAATGGCGCTGATAATAATTCCAGTTCTTCGATTAATTATTCCGATGAGAGAGGAGAACCATCAAAGAAATGTCGGGACCGCAAAACACTGCACTGTAATGCATGCAATAAACAATTCTATAAACAAGTTTATTTAGATGCCCATGTTAGGGGAACTCATTTAGGACATGAAAAGCCATTTCAATGCTCGAATTGTACAAAAGCATTTACACGATACAATCAATTGTTTCTTCATATAAAATCTACACATATAGAAATGCTTTTTCGGTGTGATTATGAAAATTGTGAAGCCTCTTTTGCAGTAGCCATTAAATTGAAGAAGCATCGTCAAGTCGCACACCGTTCCATAGAAGAACTTATTCCTCAAGACAACCAAGAAGAACAGGATGAACAGGAAGCACCCAGAAATGTCGAACTAGATATGGATCATATTTGTTACATGTGTAGACGCAAATATAGTTCAAAACGTGCTCTTAGGGAGCATATAAAGAGACATAAAAAGATCAAAGAACATGTTTGTCAAGAGTGCGGCGTTGCAAAAGTAACACGTACGGAATTAGTAACCCATATGCGCACACATACGCCAAACTTAGAAAAATTTTCCTGTCCCCAGTGTCCTCAAGTATTTAATCATAAAAATGCTATTTCACGGCACGTTAAAGTAGTCCATGAGGGTCTTAGACGGTTTACTTGCAATTATTGTCCTAAGCGTTTTGGTACTCGCAATTCCCAAGTTTGTCATGAACGCTTACACACCGGCGAACGACCATTTTTATGTGAAATCTGTAATAGAGGTTTTGTGCAACCAGAGGGTCTTAGATCACACATGAAAAATCATGATAAAAGTTTACGCAAGCATGTTTGTATATATTGTTCTCAACGCTTTATAACCTTGAAAAATCTAGTTGACCATGAACAGCGACATTTGGGTGATAAACCCTACATTTGTAATATATGCAGTAAAGGATTTCACAACAAAGCGGATTTAAAGACTCATCGCAATTCTCACGAAGAAGCTGTTGCCGATTCAGAAGATAATAAATCGGATACATTTGAATAA
- Protein Sequence
- MSTINHTNLRELCRACLRTLKHNNLNSNDTNGADTACEAGTGSTLKSLLLPNLCKLFMFLTTYDVNHEYDDFPKLLCEWCYGRLLDYDEFRKLAVRSTEMLYEQWNANNDKESSTEVEGIETKSSIQPLESFKQEDNLDDNDDNKLLLPELANMPLYIKPEPVFEAMDTQFILPSYLEEGEVNRDQLSYDSYDTKEDADGEELLLENGADNNSSSSINYSDERGEPSKKCRDRKTLHCNACNKQFYKQVYLDAHVRGTHLGHEKPFQCSNCTKAFTRYNQLFLHIKSTHIEMLFRCDYENCEASFAVAIKLKKHRQVAHRSIEELIPQDNQEEQDEQEAPRNVELDMDHICYMCRRKYSSKRALREHIKRHKKIKEHVCQECGVAKVTRTELVTHMRTHTPNLEKFSCPQCPQVFNHKNAISRHVKVVHEGLRRFTCNYCPKRFGTRNSQVCHERLHTGERPFLCEICNRGFVQPEGLRSHMKNHDKSLRKHVCIYCSQRFITLKNLVDHEQRHLGDKPYICNICSKGFHNKADLKTHRNSHEEAVADSEDNKSDTFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237057;
- 90% Identity
- iTF_01237057;
- 80% Identity
- -