Pame004301.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000053.1:2500372-2502284[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.018 2.1 10.2 2.1 2 23 288 310 287 310 0.90 2 10 4.1 4.7e+02 2.8 2.3 6 23 319 336 319 336 0.98 3 10 0.0013 0.15 13.8 0.6 1 23 342 365 342 365 0.97 4 10 0.00073 0.083 14.6 1.7 1 23 374 396 374 396 0.95 5 10 5.8e-05 0.0066 18.1 0.2 1 23 404 427 404 427 0.94 6 10 5.8e-05 0.0066 18.1 0.1 3 23 435 455 434 455 0.98 7 10 0.025 2.9 9.8 0.3 3 23 465 486 463 486 0.95 8 10 0.00034 0.038 15.7 0.1 1 23 494 517 494 517 0.96 9 10 1.5e-06 0.00017 23.1 2.0 1 23 523 546 523 546 0.96 10 10 5.3e-05 0.006 18.2 1.0 1 23 552 575 552 575 0.98
Sequence Information
- Coding Sequence
- ATGGAATCATGTTTATTATGTTTGGAAGTAGATAAAGACAGATTAAATTGCATTAAAGTGGACTCGACAAGATGGCATGATTTGGCCATATCAAAGATTATAGAAAAACATTTCTGGTCACTGAACACTATCCAATCTAGTGCCTGGATATGTCCATCATGCTGGCGTGAGGTAGATGATTTTCATAAATTTTATTTGCGCATAGAAGAAGCTCATTTAAATTTTGGCAAAATTAAAACTGAAAATGATCCAGTATCTGTGCAATGTAATGAAGATTTGATAATTCCAAAAATAAAAATTAAGAAAAATGGAGAAGAATGGGATAAAGATAATACGGCGTATTGTTTTCTTGAACCAGAAATATTAATAGACCAAATACAACCATTGGATTTGGCGGAACAGGAGATTTTAATAGGACAGCCACCGGTATCAGATATGTTGTACAATACAGAATCTTCCATATTACAAGTCGATAATAAATTAGATTTAGATGACATGCCACTAAAACAAGTCGGTAAACTTTTGAAGTTTCAAAATGATATAGCCTACAAAGACCCGTTAGAGAAATCCAAAAAATACCATGTAAACAAGCCTAGAAAAAGAAAAAATTCTAAAGGAAAAACGAGTCGAGCAGAAAAATTAACAGAAGAAAACAAGGCAGAAGATTTAAATATAAAAGAAGAGCCAAACGATTTAAATGATAACGATTCGGATAAAAGTGTTGATGAAATTATTAATGATGTCTCTGATTGTAATTCTCAGCCAGATAATAACTCCCCCAAAAAAAGAAAAATACGCCGACAGTACGGAAAGAATCGCAAAGAAAATGATAATTTTATAGCCGAGCACTTTAAGCAAATGTCTTGTGATATTTGTCATGTACCATTTAAAGACTTTTCCACCATGCAGAAACACTTTACTAATACACATAAGCAACGCGGCTATGTTATCTGTTGTAAAAGAAAATTTCATGATCGTCCTCTTTTAGTTGACCATCTTCACTCTCATTTGAATCCTGATCATTTTAAATGCAAGATATGCGGCAAAGCCATGTCCGATCGCATTCGTTTTGATAGACACATGTTACGAGTTCACAGAGCAAATGAGGTGGTTAGACCACATTGTTGCGATGTGTGCGGGAAATCTTTTGCAGAAGCCTATGTATTAAGAATTCATAAATTGTCCCATTTACCGGAAGAGGAGAAAAAGTTTCCTTGCAACGACTGTGGGAAAAAATATGGCAGCGAGTATCTACTTAACCAGCACAGGCAAGCTGTTCATTTCAAAAGGTTTGTTAAAATCTGTTCAATATGCGGCAAAGCTATAAGCTCAAGTGCTGAATTCAAGATACACATGAATAAGCACGAAGGCATACCGCTTCCTATTATTAATTGCGATGTGTGCGGCTTACGTTTGAACAGTGAACGAAGCCTAAAGTTACACAAGGAAACCCAACATCCAGTTGGTGGTAAAAAGGATCACCCCTGCCCCATGTGTGATAGAATATCGCCCACTGCAAGAGCTTTAAAAAAACACATAGTAACAATGCATGAAAAGGGCCACGACCACAAATGCAATATTTGCGAAAAAGCTTTTCGAAGGTCAGATAAACTAAaagaacatatggcttcccaacatacgggtacaccattatatacttgcacttggtgcccgcaaacatttaattccaatggaaatatgtatgcccatcgtaaaaaaatgcatcctaaagaatgggtggaatcaaaattacaaaaGTATTCAGAAATATAG
- Protein Sequence
- MESCLLCLEVDKDRLNCIKVDSTRWHDLAISKIIEKHFWSLNTIQSSAWICPSCWREVDDFHKFYLRIEEAHLNFGKIKTENDPVSVQCNEDLIIPKIKIKKNGEEWDKDNTAYCFLEPEILIDQIQPLDLAEQEILIGQPPVSDMLYNTESSILQVDNKLDLDDMPLKQVGKLLKFQNDIAYKDPLEKSKKYHVNKPRKRKNSKGKTSRAEKLTEENKAEDLNIKEEPNDLNDNDSDKSVDEIINDVSDCNSQPDNNSPKKRKIRRQYGKNRKENDNFIAEHFKQMSCDICHVPFKDFSTMQKHFTNTHKQRGYVICCKRKFHDRPLLVDHLHSHLNPDHFKCKICGKAMSDRIRFDRHMLRVHRANEVVRPHCCDVCGKSFAEAYVLRIHKLSHLPEEEKKFPCNDCGKKYGSEYLLNQHRQAVHFKRFVKICSICGKAISSSAEFKIHMNKHEGIPLPIINCDVCGLRLNSERSLKLHKETQHPVGGKKDHPCPMCDRISPTARALKKHIVTMHEKGHDHKCNICEKAFRRSDKLKEHMASQHTGTPLYTCTWCPQTFNSNGNMYAHRKKMHPKEWVESKLQKYSEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01236048; iTF_01236031; iTF_01237982; iTF_01237043;
- 90% Identity
- iTF_01237982;
- 80% Identity
- -