Pame000281.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- hang
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000007.1:285224-327163[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.19 21 7.0 0.9 3 23 450 471 449 471 0.92 2 18 0.4 46 6.0 3.5 3 22 574 593 572 593 0.90 3 18 0.012 1.3 10.8 0.6 1 22 668 689 668 691 0.90 4 18 0.0018 0.2 13.4 0.2 3 23 810 831 809 831 0.96 5 18 4.8e-05 0.0055 18.3 0.1 1 23 839 862 839 862 0.96 6 18 0.00019 0.022 16.4 0.1 2 23 951 972 951 972 0.97 7 18 0.0015 0.17 13.6 2.7 2 23 1021 1043 1020 1043 0.95 8 18 0.0061 0.69 11.7 0.2 2 23 1052 1074 1051 1074 0.95 9 18 0.0042 0.47 12.2 0.1 1 23 1087 1110 1087 1110 0.95 10 18 0.00026 0.03 16.0 1.2 1 23 1169 1191 1169 1191 0.98 11 18 0.0029 0.33 12.7 0.9 1 23 1199 1222 1199 1222 0.96 12 18 0.24 27 6.7 0.4 2 19 1230 1247 1229 1248 0.94 13 18 5.3e-05 0.006 18.2 0.1 3 23 1314 1334 1313 1334 0.98 14 18 0.00078 0.089 14.5 0.4 1 23 1369 1391 1369 1391 0.97 15 18 0.00024 0.027 16.2 1.4 2 23 1469 1491 1468 1491 0.91 16 18 1.4 1.6e+02 4.2 0.1 3 19 1512 1528 1511 1530 0.93 17 18 0.16 18 7.3 0.9 3 23 1546 1566 1546 1566 0.97 18 18 0.00087 0.099 14.4 0.7 1 23 1818 1840 1818 1840 0.98
Sequence Information
- Coding Sequence
- ATGTCGGATGAACAACGACACCAAATTCAGCAACAACAACAAAACCTACCATTAATGCAGAGGAGACATAATTGCTGTCGCCTTTGTTTAGCTCCAGACAATGAGTGTATATCCATTTTAAACAGTTATGCTGCCGACAAGGAACCTTTAGTCAGCAAAATTTATACCTGTGTATCCATAAAGATTTCTAACAATGATAACTTGTCATTACGAATCTGTCACGCCTGCATAAGTTACTTAAATTCTTGGCAATCTTTTAAAAATCGTTGTTTGGCAGCACAAGCTAAACAACGTTCTTGGCTGGAAAATTCCAACAGATCAATAAAATCTGCTGAATATCATTCATACACAGGAGATAACCATTATGATGATCAACAACACCACAGCCAACATCAGCAACAACAACAAGATGAGCAGTCATTGGCTTCTTCCATATTGGAGGGAATTTCAACGTTAAAAAAACGCAAATCTTTAACAGTCTATGTGAGTCCTAAATCGCATCAAATAAAACAACAACAAGAAAAATTATTACAAAAACAGCAACTTAAAATCGTAATGCCGTTAACAAAACGCCACTATACCAAACATAAATATAACAAGTCACAGCGACAAACTCAAAGTCAAACGTCACATACAGTGTCACAAACTACGTCAATAATGCATCATGTACAAGCATCGTCTAGTAAAACAAAGCAAAAATCTGACAAGAAACAAATGTCTGCAAACCCGCAGTCATTATTAGCAACTTGTTCTCCCCTGCAACAGTCATTTGTTAAGCCAGCAGTTCCTAGTGCAACTGCTGCAGTAACTACTTGCACAATTACTGCAACAACTGTAACAGCAACCACTACGGCTAAAGCAACTTGTTTGAATACCCCGACTAGTACAACCTTAACTGCTACGACAATGATGGCTAGTAGCAGCAGTAGTGTTGAAACCATTACAGCTGCTGCTGTTGCTTCCGGTTCGATTGTTAGTGCTGGTTCTAGTGATGAATGTTTGTTGGGTGGATCAAGTGCATCCCCTTCGGCCATCGCTTGTACAAGTGCTGTGCAACAATTGCGTTTGTTTAGACGATACTCCTATAATGTAAATCCGTTACCTGCTGTACAAATAAAAGACGAACCACTTGAAGCGGATGACGATTATAATGGAGCTAAACATCAACAGCATGAAGAATCCGATGAAATGGTAGTAGATCCAACCATGTTTTTAGAACGCACCGCCGATGAGGGTGAATTTATGGAATCCACTTCAAATTACGATTATGAAGTCATAAGAACACCTGCCGAATTAAAACCATTACCAGCTAGTACTACTATACGTGTGAGCACTAAAGATGCTGCCTGTCGTGCTTGTAATTTAAAATTTTCAACACGAGCCAACGCTAGACGCCATGAAAAGAATTTGCATCCCAATCTTTTTGAGACTCTAGAAGAAAACGATCAGTCAGTAAATAAACAAACCGCCGCTTTAAATGCCTCCTTAGAACTACAGAGAGCTGTAGCAGCTGCTGTGGCCGCAGATGCCTGTAAATTATCCAGTGGTGCCGTGATAACACCACAAAAATATCGTCAAGAAGTTGTTAATGCTTTTAATAATAGTGAATTTGGTTTTGATTATGATAATCCGGAAAAATACCGTGAACTTTTGACAGATGAGAAAATTGTTTTCCTACAACAAAACGACGAATTCCTAAGACAATATCAAAATATGACTTGTCGTTGTTGTAACAAATACTATACAACATATAAAAATTTCATGGCTCACATGCGTAAAAAGTACCTTACACTACCTAGAAATTGTTGTTTTAATTGTTTAAAACTAAACGACTCAAAAGCCTTGTTTATATCACATTTGAAAAAGCGCAATTGCATAAATTTACACAAAGTACTGCATAATCTTATGGCAAGAAATGCTAACTTTGCAGCAGCAGTTACAGCGACAGTTGCAGCCGCACCGGAAAAAGTTCGTGCCAAAGAATTATTGGTTAATAAAATGTACGAGTGCAAGCTTTGTCCAAAAGCTTTCCGTTTAAAATTAGAATTTCGTTCGCATGTCTATGATGAACATGCGGATGTGCAACGGAAAGATGTTAGCAATATTCAGTGTTGTTATTGTGCTGTCGATATTGAAGATCCTGCCGATCGTAAACGTCACTATAACAATATGGATTGTATTGTAACATTGCGTTGTGTTACTTGCGATACGAAACATGAAACACAGCAACAGTTTATGGAACACGTACAGGAAAAGCATTTGGCCAATTTTGGTGAACATGCAAAATACTTATTAAGTGCGGATAATTCACCAAGTAAGATTATGGCAGGAGCGTCCTCAGCTGACGATTCTCGCAGTGGCCATTTCAATGTTTCACTTATTAATACAACACCAAAAACACAATACTTTTCGCGAATGCCTCAAGCTTGTCCGATTTGCGGTCAGCAGTATAACAACTACAATAATGTTTTGCGTCATATGGAATCTAAACATCCTGATCAACTACCACAAACCTATAAATGTGTAAAATGTGGACAAGGATATCCTAGATTATCAAACTTACGAGAGCATATGGTTAGTGCTCATGGGGCAGATAAAGTACGACATACTGGATTTGAGTATATTGTTAATGCAGATGCAGTTAAAAATGCAGCTGGTACAACAACTGCACCACAAAATCCCTATTCAGGACGTTATGATTATGTAATGAAGGACTTAATGTCTATAACAAATGGTGGGACAGTTGTTAACGAAGATTGTGATAGTGAAAATATGGCCAAGAAAATGCGCTTAGAGTCCAACATGACGATTAATAATAACAATGGCTCAGTGACTAATGTCAGCCCAAGGGAATGTTCCATTTGTAATGCAGTTTTTGCCAATAATATTGGTCTTTCTAATCATATGCGCTCACATCAAAGTGCACAAAATAACAATTATGGGGGTTCATCTTCAAAGACAGTAACAGCTGGAAGTACCAACCAACCGGCCTTAACAGGTCAACAGCAAATATTGAGAAAATCTTTGGAACAAGCAGCAGATAGACGTTTCCGTCGCATGCGTTGCCGCATTTGTCAACGCCGCTTTTCCTCAAAGAAATCATATCGTTACCACATGCTCAATGACCATCAAATTCGTAATGTACAATTTATAAAGTGTAAACTGTGTGACGCCGAATTCGCCTATGAAAAGGGATTAAAAGTGCACATGTTTAAGATACACAATACGTTGCTCAAGGATGATATGATTATAAAACAATATGAATGCGAAATTTGCTCTATAGTCTATCGTACAGATGTAGAGTTGCAACATCATTTAGCCAATGTTCATAATAAACAAGGAGGACCCTCTAATATAGATGATGAAGAGGACGGCTATAATGCCGATGAGTCTTTGGCTGCAGGAGCACCGGATAATAGTTATGCGGCGGCTGATATGTCAGGCGTTTCGACACCTGTTAGTAGCGTTGGTTTGGGAGACACACAAGCTGGACCATTGTATTGGTTTCAATGTAAATATTGTCCCTCCAATTTTAATACCAACAAAAAATTGGCTATTCATATCAACTCGCACGACGAATTTGATTCTCATGATTATTCTTGCAAAGATTGTGGCAATGTGTACAGTGGACGTAAAAGTTTATGGGTTCACCGATACAAGAAACATCCCCAAATCCCTGAGCCCTCCGAATGTGTGATGTGCAAGAAGGTATTCTTTGATGTTCAAATGTTAAAACATCATGTACCGTCATGTAATCGCAAACCAATAACACAATCTGCCACAGAAACTTCTACCGCTGTGTACAAACATAAAACCGGTGACGATGAAGATGACGACGATGATGAACACTCCCGTGATGCTGATAACACTCTGTCCACCGCTATTAACGCAACTGTTGGCAGTGCAAGTAATTTGAAAATAAAATTACCGGAAGTAGCTTGTACGATTTGTGGCGCTCGTTTCACCGATCAGGATATGTTCGCCAAACACATACAAATGCATGAAATGGAATTGTATACAGACAATCCCTTGGCGGCAATGTTCGATACTGGTCCTGCTGATCCAAATCAATTTTATATGGATCGTATTAATGATAATGGCGAGTATGCATGCGATTTGTGTGCAAAAACATTTACACAAATGACAGCACTTAAAGTGCATAGGAAATGGCATTTCAGAGGTGATAGCAAACAGAACGAAGCCGATCAACATATGCCGAGCAACTCCCATATACAACTCAAGCAGCAACAGCTCAACAAAACGCAACAACAACAGCAACTGCAGAAATCCAAGATGCCGATCAACCATCAACATCTACTGGGATTACAAGCGGTGGGTCTAATGCCGCGTCAATTTGCCAATATGGGAGGCAATCTCAGGCCCCAGAAACGTAAACGAGAACTCAAATGTCCCCATTGTCCCTCAACCTTTATTAGTAACAACAATTTGCGAAGACACTTGTTTGAATTGCACAAAAATGAAATGGGCTATTTACCTGAACCACCGAGAATTGAATGTGATTTACCAAATATGTGCAGAAAGTGTAATGTTAAGTTCGAAACAAAAGCTGAATGGATTGAGCATAAAGTGGCGGAAGCCAGGGTTATGAAACCATTCGGCCCATTCCAATGGGGCTGTGATTTATGCGGTGCGTATGTATCGCGCAAGGAAAAATTGATCAATCATTTACATAATCATATGAAAGAACAAGTGATAGTACCGGTCGAACATTCAGAACGCAATAAACAGTCACAGCAACGGCCCCAGAAAACAGAAGCGCAAGAACATTTGCAACAACAAACAGCAGCGCAGGCCCAATGTCAACAACAACAACAGCAAGCTGAAGGCAATGATGTTATGCCTGAGTTTAAGAAGATCAAAATCCCTTCATTGCCACAGAGAAGAGAGGGAGATGAAGATTCAAGGGATAGTGGTAAAGACCAATATGATGAAGATGATGAGGAGGACGATGATGATGATGGTGATGTTGAAGCTGAAGTTGACAACAACGATAACGAAGTTGAGTTAAAAGATCAGCAGCAACAGCAACGACGACCTGTTCTAGAACAATACGATGAAGATGAGGAGGAGGAAGCAGTGGAAGGAGAAGAGTTCGATGATTTGGCAGTGGGAGCCCAACAGACGGTGGGCGGTGATGAAGATGTGGACGATGATGATGACGATGAGGAGGAAGATGATGATGAAGATGACGACAGTAGTGATGCAGATGATGAAGATCCTTCTACCAACGAAGACACTAATGAGGGCTCTAGTCTTAAAGGAAAAGCTGTTACCGAATTAGCACAACCCCGCAGTTACAATGACACTGAAAACGAAGATGTGGAAGAAGATGATTCCGATGAATTTGATGATGATGATGATAATTCCTCAACGGAAAATCGCAAACTACCCTCGTCTTCAGTAGTCAGTAATGTTGTAGTTAAATCTCGTTATTCTTGTGATTTGTGTCAGGTGTATTTCGATTCACAACAAGAACTGCAAAAACATGTTAAAATGCATTTCCTAAATGGTCCCGGCTCGGTAACGTTAACGGAAATTAAATCCTCCAAATCATCATCCAACAAAAGTCGCAGTAGTAGTAGCGACGTTGTTGCCGTATAG
- Protein Sequence
- MSDEQRHQIQQQQQNLPLMQRRHNCCRLCLAPDNECISILNSYAADKEPLVSKIYTCVSIKISNNDNLSLRICHACISYLNSWQSFKNRCLAAQAKQRSWLENSNRSIKSAEYHSYTGDNHYDDQQHHSQHQQQQQDEQSLASSILEGISTLKKRKSLTVYVSPKSHQIKQQQEKLLQKQQLKIVMPLTKRHYTKHKYNKSQRQTQSQTSHTVSQTTSIMHHVQASSSKTKQKSDKKQMSANPQSLLATCSPLQQSFVKPAVPSATAAVTTCTITATTVTATTTAKATCLNTPTSTTLTATTMMASSSSSVETITAAAVASGSIVSAGSSDECLLGGSSASPSAIACTSAVQQLRLFRRYSYNVNPLPAVQIKDEPLEADDDYNGAKHQQHEESDEMVVDPTMFLERTADEGEFMESTSNYDYEVIRTPAELKPLPASTTIRVSTKDAACRACNLKFSTRANARRHEKNLHPNLFETLEENDQSVNKQTAALNASLELQRAVAAAVAADACKLSSGAVITPQKYRQEVVNAFNNSEFGFDYDNPEKYRELLTDEKIVFLQQNDEFLRQYQNMTCRCCNKYYTTYKNFMAHMRKKYLTLPRNCCFNCLKLNDSKALFISHLKKRNCINLHKVLHNLMARNANFAAAVTATVAAAPEKVRAKELLVNKMYECKLCPKAFRLKLEFRSHVYDEHADVQRKDVSNIQCCYCAVDIEDPADRKRHYNNMDCIVTLRCVTCDTKHETQQQFMEHVQEKHLANFGEHAKYLLSADNSPSKIMAGASSADDSRSGHFNVSLINTTPKTQYFSRMPQACPICGQQYNNYNNVLRHMESKHPDQLPQTYKCVKCGQGYPRLSNLREHMVSAHGADKVRHTGFEYIVNADAVKNAAGTTTAPQNPYSGRYDYVMKDLMSITNGGTVVNEDCDSENMAKKMRLESNMTINNNNGSVTNVSPRECSICNAVFANNIGLSNHMRSHQSAQNNNYGGSSSKTVTAGSTNQPALTGQQQILRKSLEQAADRRFRRMRCRICQRRFSSKKSYRYHMLNDHQIRNVQFIKCKLCDAEFAYEKGLKVHMFKIHNTLLKDDMIIKQYECEICSIVYRTDVELQHHLANVHNKQGGPSNIDDEEDGYNADESLAAGAPDNSYAAADMSGVSTPVSSVGLGDTQAGPLYWFQCKYCPSNFNTNKKLAIHINSHDEFDSHDYSCKDCGNVYSGRKSLWVHRYKKHPQIPEPSECVMCKKVFFDVQMLKHHVPSCNRKPITQSATETSTAVYKHKTGDDEDDDDDEHSRDADNTLSTAINATVGSASNLKIKLPEVACTICGARFTDQDMFAKHIQMHEMELYTDNPLAAMFDTGPADPNQFYMDRINDNGEYACDLCAKTFTQMTALKVHRKWHFRGDSKQNEADQHMPSNSHIQLKQQQLNKTQQQQQLQKSKMPINHQHLLGLQAVGLMPRQFANMGGNLRPQKRKRELKCPHCPSTFISNNNLRRHLFELHKNEMGYLPEPPRIECDLPNMCRKCNVKFETKAEWIEHKVAEARVMKPFGPFQWGCDLCGAYVSRKEKLINHLHNHMKEQVIVPVEHSERNKQSQQRPQKTEAQEHLQQQTAAQAQCQQQQQQAEGNDVMPEFKKIKIPSLPQRREGDEDSRDSGKDQYDEDDEEDDDDDGDVEAEVDNNDNEVELKDQQQQQRRPVLEQYDEDEEEEAVEGEEFDDLAVGAQQTVGGDEDVDDDDDDEEEDDDEDDDSSDADDEDPSTNEDTNEGSSLKGKAVTELAQPRSYNDTENEDVEEDDSDEFDDDDDNSSTENRKLPSSSVVSNVVVKSRYSCDLCQVYFDSQQELQKHVKMHFLNGPGSVTLTEIKSSKSSSNKSRSSSSDVVAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00760325;
- 90% Identity
- iTF_01236982;
- 80% Identity
- -