Basic Information

Insect: Pollenia amentaria
Gene Symbol: -
Assembly: GCA_943735935.1
Location: CALSEV010000560.1:200043-205816[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.39 44 6.0 0.4 1 16 127 142 127 144 0.84

2 12 0.43 49 5.9 0.2 1 19 225 243 225 243 0.88

3 12 0.002 0.23 13.2 5.8 1 23 266 288 266 288 0.98

4 12 1.9e-05 0.0021 19.6 0.3 3 23 308 328 306 328 0.97

5 12 0.00062 0.071 14.8 1.1 1 23 354 375 354 375 0.96

6 12 0.00015 0.017 16.8 0.5 1 23 381 403 381 403 0.98

7 12 0.00046 0.052 15.3 1.3 1 23 435 457 435 457 0.96

8 12 1e-07 1.2e-05 26.8 0.7 1 23 463 485 463 485 0.99

9 12 0.00013 0.014 17.0 3.5 1 23 491 513 491 513 0.99

10 12 8.3e-07 9.4e-05 23.9 0.3 1 23 519 541 519 541 0.98

11 12 1.8e-05 0.0021 19.7 0.3 1 23 545 567 545 567 0.98

12 12 0.057 6.5 8.6 0.1 2 23 580 602 580 602 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.39	44	6.0	0.4	1	16	127	142	127	144	0.84
2	12	0.43	49	5.9	0.2	1	19	225	243	225	243	0.88
3	12	0.002	0.23	13.2	5.8	1	23	266	288	266	288	0.98
4	12	1.9e-05	0.0021	19.6	0.3	3	23	308	328	306	328	0.97
5	12	0.00062	0.071	14.8	1.1	1	23	354	375	354	375	0.96
6	12	0.00015	0.017	16.8	0.5	1	23	381	403	381	403	0.98
7	12	0.00046	0.052	15.3	1.3	1	23	435	457	435	457	0.96
8	12	1e-07	1.2e-05	26.8	0.7	1	23	463	485	463	485	0.99
9	12	0.00013	0.014	17.0	3.5	1	23	491	513	491	513	0.99
10	12	8.3e-07	9.4e-05	23.9	0.3	1	23	519	541	519	541	0.98
11	12	1.8e-05	0.0021	19.7	0.3	1	23	545	567	545	567	0.98
12	12	0.057	6.5	8.6	0.1	2	23	580	602	580	602	0.94

Sequence Information

Coding Sequence: ATGTTTTCCCTTACAGATGAAACGGTCGATTTAATAGAAGAAACTAGCGATGAAATGGAAAATTGGATATATTATGCCAATAAAACGGACCCTGAAGAAAATGGAGATACGGACAGCTTTACCATAGTTGAAGCAGAAGAACAACAATTTATTTATACAGATCCGACTGGCCAAGGGGCTAATACTAATGAGCCAACGTTTCAATATGAGTGCGATTATAGTAATGTTAATGGCGAAGAATTCGATCATTCTAAAAATAATATTGCAAACGAAGAACAAGCTCAAACACAAGTAGATAATGATGACGATGATGATACCTTGAAGCATAATTTGATTTTAAGAGAAACTATTGATGAAAATGGCCAATTGGCGGAGGACTATTTTTGTGAAGAATGCAATTTATCATTTAACACTATAGAAGACTTTCTCAAATATCATCCTTTTGTCGAACTGTTAAATGAAAATTCCGTACAGCAAGAAACACAACAACAAGAAGTGAAACCGACTGTAACGGAAGACAAATTATGGGATTTAGTAGGCAATTTAGATGAAACCGAAAAGGCTAGTGAGACCATTGAAGACATAATAGAAATTAAGCCAGAAGCAATAATAGAAAGTTCTTTACATGAACAAGAGAATCCTAATAATGCCGTAGAATTGGAAAAAGAACGTTATTTTTGTTATGACTGCCAGCAAGTATTTAACGATTTAGCAACAGCTGAAAATCATGATTGTATCAATCAATTGCCAGAGTCCAATTCTGATTTACTTGAACAAACTGCTACTAATAATGTCCACAGATGCCATTTATGTGATAAAGATTATAACTCGTTACGCTCTTTTAACAATCATCAACGTTGGCATAAAAAATCTGAAAATCTTTTAGGTCGCACCAAGACTTTGCATGGTGCGACTACAGCTTGTGAGATATGCAATACAATATTCGCCTCGGAGAAGAATTTGAAATTGCACATGAAAATGCACAAAAAGCATACCGTTAAAACCATACAGGAAGCACTTCCAGTTGGAGCACAAAATGAATACAACGAATTGAATAAGTTCTTTTGTGAAATTTGCAATAAAAGTTTCGATCAAAAACTTTTGGTCATCCATAAGAATATGCATCAAAATTTAGAGGAATACAACTGTGGCAAATGTAATAAACAATTTGAAAATTTACCAAGCTACGAAATACACATGCAAATGCATGTGGACAACATTACAAAAGCTAAAAAAGGAATAATACCTCATGAAGCACCCACCACTTCCGCACAAAGTTATGTTGAGGGTGGTAAGCGAAAGCATGCTTGTCAGTATTGTGGCAAAGAGTTCCAACGTCCTTATGAAAAAGTaaaacatgaacgtatacacacaggtgaaaaaccatatgaatgtgaagtatgcggtaaaacatttagggtttcctattctttgactttgcatttgagaacacataccgatatacggccatatgtttgtgccacatgtaataaacgttttAAGCAACAGTCGGTATATGTACATCATCTCAAAACACACGTGGTTGAACGTGGCTATAAATGTGATATATGCGGTAAAAGTTTTCGTACTTCAGTACAATTAGCTGGTCATAAAAACATCCATAGTAAGCCCTATAATTGTACGGAATGTAATCGTCCATTTGCCTCATTATATGCCGTAAAAATTCATATGAAAACCCACAATAAGTGTCACAAATCTAACAAAAATCTCAAAAATCGCTGCTATATTTGCGGTGCCTCCTATGCTCGAGCCTTTGCGTTACGTTTTCATATCAAAGAACAACATGGAATTGAGGTGGATGATCAAAATAGATTATTAGCAACTAGTGGAAATACAAGTCTGCCTAAAGAAATAGATGCTGAAACAGTCATACTAATGAATGCTGCCCATGACGCAAGTAATCAACAAATGCATTTTTTTAATGCAGAGGATGATGACGAAGAAGACGTTTGTGATGATAATACTGATGGTATTTTCAGTAATGAGGTGGATCATGAAGAAAATATACAAAATCCTTTGCCAAATAATATGTATTTAGATGAAACGGAAGCAGCCACTCAGACCATTTTAAATACTGATGAGATTTCTGTTGATAATTTACCTACAGAAGAAATTATTACCGATTGGCTTGCAATAAATTAA
Protein Sequence: MFSLTDETVDLIEETSDEMENWIYYANKTDPEENGDTDSFTIVEAEEQQFIYTDPTGQGANTNEPTFQYECDYSNVNGEEFDHSKNNIANEEQAQTQVDNDDDDDTLKHNLILRETIDENGQLAEDYFCEECNLSFNTIEDFLKYHPFVELLNENSVQQETQQQEVKPTVTEDKLWDLVGNLDETEKASETIEDIIEIKPEAIIESSLHEQENPNNAVELEKERYFCYDCQQVFNDLATAENHDCINQLPESNSDLLEQTATNNVHRCHLCDKDYNSLRSFNNHQRWHKKSENLLGRTKTLHGATTACEICNTIFASEKNLKLHMKMHKKHTVKTIQEALPVGAQNEYNELNKFFCEICNKSFDQKLLVIHKNMHQNLEEYNCGKCNKQFENLPSYEIHMQMHVDNITKAKKGIIPHEAPTTSAQSYVEGGKRKHACQYCGKEFQRPYEKVKHERIHTGEKPYECEVCGKTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKQQSVYVHHLKTHVVERGYKCDICGKSFRTSVQLAGHKNIHSKPYNCTECNRPFASLYAVKIHMKTHNKCHKSNKNLKNRCYICGASYARAFALRFHIKEQHGIEVDDQNRLLATSGNTSLPKEIDAETVILMNAAHDASNQQMHFFNAEDDDEEDVCDDNTDGIFSNEVDHEENIQNPLPNNMYLDETEAATQTILNTDEISVDNLPTEEIITDWLAIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236984;
90% Identity: -
80% Identity: -