Pame037707.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010000885.1:131444-134888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.069 7.8 8.4 1.3 1 23 68 91 68 91 0.94 2 20 0.0003 0.034 15.8 3.8 1 23 97 120 97 120 0.97 3 20 0.00024 0.027 16.1 0.4 2 23 150 171 149 171 0.96 4 20 0.017 1.9 10.3 1.8 1 23 248 271 248 271 0.94 5 20 0.0011 0.13 14.0 2.2 2 23 279 300 278 300 0.96 6 20 0.028 3.2 9.6 0.3 2 20 309 327 308 329 0.91 7 20 0.0099 1.1 11.0 1.6 1 23 495 519 495 519 0.96 8 20 0.21 23 6.9 2.6 1 21 526 546 526 547 0.91 9 20 0.035 4 9.3 1.0 3 23 558 579 557 579 0.95 10 20 0.0071 0.81 11.5 3.1 2 23 586 607 585 608 0.94 11 20 0.004 0.45 12.3 2.0 1 23 615 637 615 637 0.97 12 20 0.0016 0.19 13.5 0.2 2 19 664 681 663 683 0.95 13 20 0.00051 0.058 15.1 1.8 1 23 737 760 737 760 0.97 14 20 0.019 2.2 10.1 1.1 1 23 797 820 797 820 0.97 15 20 0.013 1.5 10.7 7.9 1 23 852 875 852 875 0.97 16 20 5.4e-07 6.2e-05 24.5 0.9 1 23 904 926 904 926 0.95 17 20 1.4e-05 0.0016 20.0 0.5 1 23 932 954 932 954 0.99 18 20 2.1e-05 0.0024 19.5 6.9 1 23 960 982 960 982 0.98 19 20 1.6e-05 0.0019 19.8 3.1 1 23 988 1010 988 1010 0.99 20 20 0.086 9.7 8.1 1.1 1 22 1016 1037 1016 1040 0.90
Sequence Information
- Coding Sequence
- ATGAATAACAATGAATGTCCAATTAAAATTAATATGTATGTATGTGTTTTTAGTTCCTCCTCAAGTGATGAAAGTTATTATGTGACACCTAAAAGGTCAAAAAAAGAGAAAGACAACATTAGCAAAAGTCAACAAGTTCAACGAAAAAGAGGTCGAAAAGCCCCGGATTATTACGATAAAATTAAAGAGGTAAATGATCGTTTTGCATGCCTTATATGCCAAAAAACATTTTCATTAAAAAGGGATTGTGGTCGACATATAGCAACGATACATTTACCTCAAACTGTATTTCCGTGCGAAATTTGTGGAAAACATTTTAATCATAAGGTAAAAATTCAACAGCACTTAAAACGTATGCATTCTGACGGCAAATCGCATCAATCCAAACGTAAGAACTTGTCATTTGGAAACCGTTTATATGACAAGCCTTCTACTTGGCTTCTAGTGCAATGTAAATTATGTGATGCTATATTTAAAACGGCGAAAGAACTCCGTCAACATCTGTCAAATCACAATAATTTTGACACACTCCATAGCTTAGAATTAAATAGCAATATTGTCCAAAATTTTTTTGGAAATAAATTAGATTTAAACATCGTAAAGGAAAGTATATGTAAAGATATACGTGAGGAAAATTGGTTAAAATACTATATAGTGCTGAACAAATATTCCTATGAAATGTCCATAAGTGATACAGAAGCGGAAGACTTGGATGAGGAAACTACAAAAAGAGTCGCAAAATATAAATGCGATTTGTGTGCTAAAGAGTTTTCATTTAAATATCAAGTGTTCTCTCATTTTAAAGAAGCTCATAGTGAAGAAAAATTTTCGTTAATATGTAATCATTGCAAATTAGAATTTATTTCAAAAGAGATGTACAAACAACACTTACAAACGCACTGTGAAAATAAGGATAAAATTTTGGTCTGCGTAAATTGTCCGGCAAAGTTCGTTTATCCAGAAAATTTAAAAAATCACAACTGTACAACAAAACCAAAATTTACTTCTAGCCAACATCCAAAGGTAAAAAATTTAATGGTACCCAAGGAAATTCAGCAAACAAATCCGAAAATGTCTTCCGTGTTACACCCAAGTAAAAATATCCCCCACATTTTGCCACATCAATGCAAGCCAAATGGCTGCAAACGCATAAAGTGCATGATATGTTTTTCCGAACACAATCGTATACGCGATTTAAGATATCATTTACAAACTCATCGGTATTCAGTTAATTTTGAAAAAAGAAAAGAAATCGAAAGCATGGAAGACATATCATCTCAACTATATCCCGATGAACCAGTACCTTTAACAGAAGAAGTGTTAATAAAACGTATTTGTTCGGATATTGCAAATGAAAGTAAAATAGATCATTTCTATTCTATAACAAATGAAAATGGATACGAAGTTTCTTTAGACAGTTCTGAAACGGAAAGTGATACTGATGATGACAACGCTGAAAAAAATGATAAACTTAAACGTGATTATAGATGTGATTTATGTCCTCAATTGAGTTTTAATCGTAAATATAAACTATTTGCTCATCAAAACAATACACATACTTGGGAAGAAGCTTGCCACATTTGTGAACATTGCAATAGGAGATTTCTTTCATCATATATGTTACAACTACACTTTAAAAATCAATGTAAAAACACTCAAAAAATTAATTTTTGTCGTCATTGCCCGCAGCGTTTTATGTGGCAAAGTAATCTGAAAGCACATGTCCTAATAGAACACGAAGTTGATCGAAGCCTTGAATGTTTTTTATGCCAGAAAAAATACATTCCGCGAAAGGATTTTAAACGTCACTTGCTCACGCACCACTCCGCCGATGCCGAACTTCATTATTGTCTTCTCTGTCCAAAAACATTTTTTAGTGTAGACTATCTCAACGATCATTTAAGTCGTCATCGTTTGACCACTGCCGATGTCGACACTGTTGAAAGTATAATACATTCCACATGCTGGCCAAATGGCGAAAAAATTATTAAATGCAAAATATGTGGCCAAACATTTGAAACGATGGCCAGCTTAAAAGAACATTTTACTCCAAGAAACACTCAAAATGCATGTGCCAAAGAACATTCCTTGGAAAGTTATTCTGCAATTAACCAAAAAGGGTTTGAGTTGCATTTAGAATTGGATTCTGAAACAGAATTGGAAGACGACGTAGAACATAAAAATGGGAATACAATTATGGTTTGTTCCTATAATTGTTACATGTGTAGTGCGTCGTTCAAAAGAAAGTATCAGGTGGCTCAGCATCAGCGTTCAATGCATAAATACGAAATGCTAGCTCTGAAATGTGAACGTTGTATTTTTAGAACAGTCTCACAGaaagtattagattatcacaaatctacgcagtgttttaatgctgaaaagcaatttgaatgccaacaatgtaaatttaaatttatgtggcaagagaatcttgagagtcatattttaacatttcatacATTAAAGAGTACTAACAAAGATGCAAATAATGCAGAAATATCGCTTTCCAATGATACTATACAAACAAATAGGAAAGCTGAAACCAATATTTTCGAATGTATGCACTGTAATCGTCGTTACAATCGTAAAAGCAGTTACAAAACTCATTTTAAAAAATTTCACGACAATGAATTACAGTTGACACCAAAGAAGAGTGtttccagttcaaaaaatctgaaacagcctgcacagaaaatggaaaagaaatttttatgcacattttgtggtgtatctttttcaaacaattccaatcttacaatacatataagaaggcatacaggagaaaagcccttcaagtgtgatttttgcgttatggcctttccacgatcatccgatttacaggcgcaccggcgttcgcatactggtgagcgtccctttaaatgcaaatactgcgataaatcattttcccgacaatgcaaactaaagtatcatgagcgcatacatactggcgaacgtccttaccagtgtacattttgtcttaagtcatttattaagtccgactatttaaaactacatatgcgtcgtcatactgacgaaaagccttatgtatgcaacacttgtggtgaagatttcatatgtgccacttctttaaaacaacatcgaacttcaaacggtcattaA
- Protein Sequence
- MNNNECPIKINMYVCVFSSSSSDESYYVTPKRSKKEKDNISKSQQVQRKRGRKAPDYYDKIKEVNDRFACLICQKTFSLKRDCGRHIATIHLPQTVFPCEICGKHFNHKVKIQQHLKRMHSDGKSHQSKRKNLSFGNRLYDKPSTWLLVQCKLCDAIFKTAKELRQHLSNHNNFDTLHSLELNSNIVQNFFGNKLDLNIVKESICKDIREENWLKYYIVLNKYSYEMSISDTEAEDLDEETTKRVAKYKCDLCAKEFSFKYQVFSHFKEAHSEEKFSLICNHCKLEFISKEMYKQHLQTHCENKDKILVCVNCPAKFVYPENLKNHNCTTKPKFTSSQHPKVKNLMVPKEIQQTNPKMSSVLHPSKNIPHILPHQCKPNGCKRIKCMICFSEHNRIRDLRYHLQTHRYSVNFEKRKEIESMEDISSQLYPDEPVPLTEEVLIKRICSDIANESKIDHFYSITNENGYEVSLDSSETESDTDDDNAEKNDKLKRDYRCDLCPQLSFNRKYKLFAHQNNTHTWEEACHICEHCNRRFLSSYMLQLHFKNQCKNTQKINFCRHCPQRFMWQSNLKAHVLIEHEVDRSLECFLCQKKYIPRKDFKRHLLTHHSADAELHYCLLCPKTFFSVDYLNDHLSRHRLTTADVDTVESIIHSTCWPNGEKIIKCKICGQTFETMASLKEHFTPRNTQNACAKEHSLESYSAINQKGFELHLELDSETELEDDVEHKNGNTIMVCSYNCYMCSASFKRKYQVAQHQRSMHKYEMLALKCERCIFRTVSQKVLDYHKSTQCFNAEKQFECQQCKFKFMWQENLESHILTFHTLKSTNKDANNAEISLSNDTIQTNRKAETNIFECMHCNRRYNRKSSYKTHFKKFHDNELQLTPKKSVSSSKNLKQPAQKMEKKFLCTFCGVSFSNNSNLTIHIRRHTGEKPFKCDFCVMAFPRSSDLQAHRRSHTGERPFKCKYCDKSFSRQCKLKYHERIHTGERPYQCTFCLKSFIKSDYLKLHMRRHTDEKPYVCNTCGEDFICATSLKQHRTSNGH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -