Pame001556.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia amentaria
Gene Symbol
-
Assembly
GCA_943735935.1
Location
CALSEV010000018.1:763554-766083[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00014 0.016 16.8 5.0 1 23 181 203 181 203 0.98
2 15 0.011 1.2 11.0 2.4 1 21 209 229 209 230 0.94
3 15 3.4 3.8e+02 3.1 5.2 1 19 284 302 284 305 0.94
4 15 3.4e-06 0.00039 21.9 2.0 2 23 316 338 315 338 0.96
5 15 0.0015 0.17 13.7 1.3 3 23 417 437 415 437 0.98
6 15 0.0015 0.17 13.6 2.9 1 23 443 465 443 466 0.95
7 15 0.0052 0.59 11.9 0.3 1 23 487 510 487 510 0.96
8 15 1.1e-05 0.0013 20.3 2.6 1 23 516 538 516 538 0.98
9 15 2.2e-06 0.00026 22.5 2.4 1 23 544 566 544 566 0.99
10 15 1.3e-07 1.5e-05 26.4 1.8 1 23 572 594 572 594 0.96
11 15 0.0086 0.98 11.2 4.1 1 23 600 622 600 622 0.97
12 15 0.001 0.12 14.2 2.2 1 23 628 650 628 650 0.96
13 15 6.8e-07 7.8e-05 24.1 0.4 1 23 656 678 656 678 0.99
14 15 1.6e-06 0.00018 23.0 1.7 1 23 684 706 684 706 0.99
15 15 0.011 1.2 10.9 0.1 1 19 712 730 712 731 0.97

Sequence Information

Coding Sequence
ATGTTAATACTTGAAATATATGGTCGGATGTGTCGAGTGTGTATGTGTAAATCAAATAATTTGCATGATTTAAATGAGACAACTGAAGAGTGTCTCACCATGAATGAAATGTTGACTAAAACTGTGTCCGGCATACATGCCAACATCGAATTTCCAGTGCCTCAAGAAATTTGTGATATATGTGTGGAACATTTGCAAATTTCGTTTAGATTTCAACAACTATGTATGAATACAAATGAACAAATGTTGAAAATCTGGGAACAATCCCAAAAAGCCGAAGTCAAGCAGCAGTCATTAACAAGTGAAGTGGAGAATGAAGAAGAACCAGATCCTATTAAAGTAGAATATGAGATGACAGAAGGGGAAGAGCAAAAGCTTCATAATATGGAGGTATTGGAGGACTTTGAAAAAGTGGAAAATGGCAATAAATGGGAAAATGATACGGATAATGAGGCTCCAGATAAAGATGAATTAGCTTTGCAAGATACTTCTATAAAATCTACATCGTCAACGTCATCTACACGTCCTCTTGCAGCTCAGTTTTCATGTTTAGAGTGTAAGGAATCATTTGGAAAACATTCTCAATTAAAACGACATAGACGAAAACATGACTCTACACATCTCTTTGATTGTCTAAAGTGTACGCAACGTTTCAGAACTAAAACTCTAATGCAGAAACATACGAAAAGCTGCAAAAAATCTAAAAGCGACAATGAAGATGACGATGATGACGAGGATGTGCCTCTCAGTGCTTTAAAGAAAGCTGAAACTGATATTGAAAGTGATGTTTCTAAAGAAAATGACAAGAAGAAACGAAAACTTGTAAAATCAGTTGAAAAAAAGACACCTTATTATTGCTCCAATTGCAAAAGCTACTTTAAATATGGCTATCAGTTAACAAAACATAATTGCAGTGAGAATAATAAAAATAATGCACATTCAAATAAATGTGAAATATGCAATAAGACTTTTACTACAGAAAATATGTTACAAAAACATATGAGTAGCAAACATAAAGACAACAAAACCGCAAACAAGACAGAGAAAAATGCCACAAAAACTAGAGACAAAAATAAATCCATTACTGATGATGAGGGCCAAATTGAGGAAATGGATATGGATGATGATAATGATAATTGGAATGACATAAATCAGGCTGGATCATCGGATGGTTCTGATTCAGATTATGTCGAAAAGGAAAAAAGCACAACAAAAACCAAAGCAGAGCCTGCAGCAAATCTATTTGGTTGTAATGAATGTGATGCTTCATTTCGATTTGAAAAGCAAAGAGCCCGACATATGAAAAAACACACAGAAGCTCATCGCTTTGTGTGTGCCATATGCTGGGACCGTTTCAAGTATCCTCACATGCTACAGAAACACATGGAAAAACATCATCCCGAAGAGAATCCTAATCCTAAAGTTGTGGAAACAAAACCGGAAAATGTAGAAAAGACACATGTTTGCAGTTATTGTCCTTCTGCATATTCAAATGTGGGAGGTTTGGCCCAACATATGAGTAAGAAACATCCAGAAATAAAACCTTTCAAATGTGACAAATGCGATAAAACTTTTGTGGTTGAAGAACATTTGAAAATACACACAAATCGTCATATGGGTATTAAGAACTTTAAATGTGATCTTTGTGATAAATCATTTTCATTTAAGTTTGCCATGAAACAACATATGCGCATACACACAGGAGATTTAAATTATTTGTGCACTCTATGTGGCAAAAAATTCTATCGGCCTAGTAATTTACGCCAGCATATGCAGAGACATGGTGATGACAAGCCCTATACATGTCCTCACTGCCCCAAACGTTTTAAATGTCCTTCGGATCGTTACATACATTTGATGTCGCATCAGGAAGGTAAAAATCATGTATGTCAAACTTGTGGTGCAAGATTTTCTCGAGTAGATACCCTACATCAACATCAAATACTGCACACAGGAGAAAAACGCTATAAATGCGATCAATGTCCCATGGCATTCCCCCGTTTGATGaatttaaatcgccatttacgcacccatactggtgaaaaaccatataaatgcaaattctgtgaaaaggcgtatgcccaaagcaatgatttaaataaacatttacgtacccatgtgggtgaaaacacctatatgtgtAGCCAGTGTCCAGCAGCCTATAAATATCAAGCTGACTTAAGAAATCATGAGTGGGAACATTACCGGTTACAAAAGGAAGCAGAACAAAAAGCTAAAGATGAAGCAACGGCTTTAAAAATGAAAGAAGAACAAACCATAATGGAAGTTAATGCATAA
Protein Sequence
MLILEIYGRMCRVCMCKSNNLHDLNETTEECLTMNEMLTKTVSGIHANIEFPVPQEICDICVEHLQISFRFQQLCMNTNEQMLKIWEQSQKAEVKQQSLTSEVENEEEPDPIKVEYEMTEGEEQKLHNMEVLEDFEKVENGNKWENDTDNEAPDKDELALQDTSIKSTSSTSSTRPLAAQFSCLECKESFGKHSQLKRHRRKHDSTHLFDCLKCTQRFRTKTLMQKHTKSCKKSKSDNEDDDDDEDVPLSALKKAETDIESDVSKENDKKKRKLVKSVEKKTPYYCSNCKSYFKYGYQLTKHNCSENNKNNAHSNKCEICNKTFTTENMLQKHMSSKHKDNKTANKTEKNATKTRDKNKSITDDEGQIEEMDMDDDNDNWNDINQAGSSDGSDSDYVEKEKSTTKTKAEPAANLFGCNECDASFRFEKQRARHMKKHTEAHRFVCAICWDRFKYPHMLQKHMEKHHPEENPNPKVVETKPENVEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCSQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKDEATALKMKEEQTIMEVNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259363;
90% Identity
iTF_01236972;
80% Identity
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