Pame037706.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pollenia amentaria
Gene Symbol
-
Assembly
GCA_943735935.1
Location
CALSEV010000885.1:81449-105099[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.13 14 7.6 1.3 1 23 254 277 254 277 0.91
2 26 2.1e-05 0.0024 19.5 2.0 1 23 283 306 283 306 0.97
3 26 0.0015 0.17 13.6 0.6 2 23 336 357 335 357 0.96
4 26 0.0039 0.44 12.3 1.0 1 23 434 457 434 457 0.96
5 26 0.12 14 7.6 1.1 2 23 465 486 464 486 0.97
6 26 0.00049 0.056 15.2 1.3 2 23 531 552 530 552 0.97
7 26 0.084 9.6 8.1 0.7 2 20 565 583 564 586 0.94
8 26 0.0078 0.89 11.4 4.5 1 23 665 688 665 688 0.95
9 26 0.0034 0.39 12.5 0.2 1 20 695 714 695 716 0.95
10 26 0.057 6.5 8.7 0.2 2 23 728 750 727 750 0.94
11 26 0.00077 0.088 14.5 0.4 2 23 765 786 764 786 0.97
12 26 2.9e-07 3.3e-05 25.3 1.9 1 23 792 814 792 814 0.98
13 26 0.022 2.5 10.0 3.7 1 23 959 983 959 983 0.96
14 26 2.1 2.3e+02 3.8 1.2 2 21 991 1010 990 1011 0.89
15 26 1.4 1.5e+02 4.3 0.7 3 23 1022 1043 1021 1043 0.95
16 26 0.01 1.1 11.0 4.2 1 23 1053 1075 1053 1076 0.95
17 26 0.0078 0.88 11.4 4.2 1 23 1083 1105 1083 1105 0.97
18 26 0.0072 0.81 11.5 0.2 2 19 1132 1149 1131 1151 0.95
19 26 0.0041 0.47 12.3 4.5 1 23 1205 1228 1205 1228 0.97
20 26 0.012 1.4 10.7 1.9 1 23 1265 1288 1265 1288 0.97
21 26 0.073 8.3 8.3 6.2 1 23 1319 1342 1319 1342 0.97
22 26 7e-07 7.9e-05 24.1 0.7 1 23 1369 1391 1369 1391 0.96
23 26 7.5e-06 0.00085 20.9 0.3 1 23 1397 1419 1397 1419 0.99
24 26 3.9e-06 0.00044 21.8 2.9 1 23 1425 1447 1425 1447 0.98
25 26 6.3e-06 0.00071 21.1 2.1 1 23 1453 1475 1453 1475 0.99
26 26 2.5 2.9e+02 3.5 0.2 1 21 1481 1501 1481 1502 0.92

Sequence Information

Coding Sequence
ATGTCCAGCGATATTAAAATTGAATGTTTAATAAATGGAGTTCGTTATAAATGCCGTACTTGTTTTGATCCAGGAAGATCATTTTACTCCCTTAGAGATGAGTATAGCAACTCCAAAACTTGGTGTGATTTATTAAGGGATATTACTCAAATACAGACAAACGACGAAGATTTACTTCCAAAAACAATGTGTTGCAAATGCTTGGAAAAACTTAAAAGTTCCTATGATTTTATACTTCAGATTCATGATGTTAATAAAAAGTACTCAGAATTGTTAGACAGTTGTAAAGATCCATTGCAGGAAGGTCTTTTGAATGAAGTTGATAAATTTACCGATTGTTTGGCAGAATCAACAATTGATTTACCATTGAATCAATATATTCCAGAAATTAAGATAGAGGAAGATTTTCCTGATCCTTATAACATTGTTTTAAATAACAATCAATGCGCAGAAGACAGTAAAGCAAAATTAGAAAACGAAGGTTTGCCGGAAGCTGAGGATTCTTTAGGAAACATTAATACAGATGACTTTAAATCAAGTGATGAATTAGGAGAACGTAAAAAGAATCGAAACATAGATGAAAATTATAACGATAATAGGAATGATTATAGCTCCTCTTCGTCTGATGAAAGTGATTATGTGCCACTCAAAAAATTAAAGAAAGAAAAATGCAACAATTCTAGCAGTCAGCTAATTAAACGCAAAAAAGGTCGTCAAGCTCCAGAATATTATGATAAAATCGAAAAAGTTAACGATCGTTTTGTGTGCCTCATATGCCAAAAAACATTTTCATTACGAAAGGATTGTGGTCGACATATAGCGTCGATTCATTTGCGCCAAACCATGTTTCCTTGCGAAATTTGTGGACAACGTTTTAGCCGTAAAGACAAAATACAACATCATATTAAACGTATGCATTCCGGCGGAATAGTATATCCGCCTAAACATAAGGAATGGTTGTTTGGAGATCGTTTATATTATAAGCCTTCTACTTGGCTTCTTGTGCAATGTAAATTGTGTGATGCAATATATAAAACGAGTAAAGAACTTCGTCAACATCTAACCAACCACAGTAATTTCGACACTCTCCATGATTTGGAATTAAGCAGTAATGTTATCCAACATTTGTTCGGAAATATGATCGATTTGAACCTCGTGAAGGAAAGCATATGCAAAGATATACGCGAAGAAAATTGGTGTAAATACTACACAGTGCTAAATAAATATGGCTATGAAATGTCCATAAGTGATACGGAAGTTGAAGACATGAATGAAGAAAATCTAGAGAGTCCAAAGAAATACAAGTGCGATTTATGTGCAAAAGAGTTTTCTTTTCAATACCAAGTTTTCTCTCATTTAAAGGAGGTTCATGGCGAAAATGAAATTTCTTTAAAATGCAATCTATGCAAGTTAGAATTTATTTCAATCAAAATGTATGAACAACATTCAAAAACGCACTGCCGTAATAGAAATAAAGTTTTAGTTTGTGCGCAGTGTCCAGCAAAATTTGTTTGGCCTGATAATATGAAAAACCACAATTGTGCCACTAAAATGCTGCTACTCTCAACGGAATCAAATAAAAAACCACTAAAATGTAGTATTTGCGATCGAAAATTTGAGGTAAAGACTAAATATGAAAAACATTTAGAGACTCATAAAGATGGAAGAACAGTATCTTCCAAGACTATAATCCGTTGTGGCCTTTGCGCTCACTCCTTTGACAAATTAAGAAATTTACGCCAGCACATGCCTTTACATTCCGATGGAAAGACTGGCATTGACTTTAAAGGCTGTATTTATGTAAAACGTTTTGAACGTGCAAAATCAATTGATTTTGCTTTACTACAGCAGGAAATACAAAACGCTTATAGTAAATCTCAAATAAGTCGTTTTTATCGAGCAATTAATAGGGATGGCGATGAAATGGACATTTTGGATTCGGATAGTGATGCAGAGGAAGCCAAGGATAATGATGAAGCTTTAGAAAATGAATATAAATGTGAACTCTGTAGTGCAGTATTCAGAAGAAGAAAACTTCTATTAAATCATCAACACGAATGTCACAATGGTGTACCTTTGCCTTTTACGTGTAACGACTGTACCCAGCAATATGTAAGTAATGATTTATTACAGCAACATTTGGTTAGGGATTGTTGGAATGAACATAGGCGAATAGCTCAACAATGTGACTATTGTAATGCTCGATTTATATGGCCAAATAATCTAATAAAACATAAAGAAATTCAGCATAAAAATCAGAAACAACCAAAGCCAAAAAGAGGTAGTACATTAAAATGTGAGTATTGTGAAAAAGTGTTCATATGGCCCAAGGATTTGGTGCGTCATAAAAAAACGCACACAGAAGGGAAAAAATTTACCTGTCCGCATTGTGATCGTAAATTTCAACGCAAAGACAATTTGCTAGCGCACATCAGAATACATTGTCCTGATGGCATTTCCACTGTTTCCAATCCCGGTAAAAGTATCGACTACATACTACCACATTTAATAAAGCCACATGGTTGCAAACGCATTAAATGCATGATATGTTTCTCTGAACACAATCGCATACGCGATTTAAGATCTCATTTACGAACACATCGGTATGCAGTTAACTTTGAAAAAAGAAGAGAAACCGAAAGTTTGGAAGTCATATCTTCTCAACTATATCCTGATGAGCCAGTTTCTTTTACAGAAGATGTATTAATAAAACGTATTACCTCCGATATTGTTGCGGAAAATAATTTAGAACGTTTTTATTCTATAACAAATGAAAATGGATATGAAGTTTCTTTAGACAGTTCAGAAACGGAAAGTGATTCTGATGACAATGACAACGATAACGATAAAGAAGTCAATAAATCTAAACGTGTATATAAATGCGATTTATGTCCTCATTTAAGTTTTAGTCGTAAATACAAGCTCTTCGCCCACCAAAACAATAAGCATACTTGGGAAGAAGCACGTCATATTTGTATACATTGCAACGGGCGATTTATTTCATCATATATGCTGCAACTTCACTACAAAAATCAATGTAAAAATTCTAAAAAACGCAATTTTTGCCGTCGCTGTCCCTTGCGATTTATGTGGAAGAGCAATATGAAAGCTCATATCACAATGGAACATGGACACGAGATCGATTTAACTCGAGGCCATGAATGTTTTCTTTGTCAAGAGAAGTTTTTTCCTCAAAAAGAACTTCAACGTCACTTGATCACACATCATTCTGCGGATGCTGAACTTCATTATTGCCTCCTCTGTCCAAAAACGTTCTTTAGCGTAGAACATCTTAATCAACATTTGAGTCGCCATCGTTTGACTACAGATGATGTCAAAAGCGTTGAAAGTATAATACATTCCACATGCTGGCCAAACGGTGAAAAAGTTATTAAATGTAAAATATGCAGCCAAACATTTGATACAATGGCCAACTTAAGAGAACACTTTTCCCCTAAGAACTCTCAAAACATGTGTGCAAATCATCATTCGTTTGCTAATTACTCGGCGATCAATCAAAAGGGTTTCGAACTGCATTTGGAACTTGACTCTGAAACAGAAGTGGAAGCCGAGGTGCAACATAAAAGGGGACAAAAAAATATTGAATATCCCTATAATTGTTGTATGTGTAGTATGTCTTTCAAAAGAAAGTATCAAATAGCTCAACATCAGCGTTCTATGCATAACTTTGAAATGTTGACCCTAAAATGTGATCATTGCATTTTTAGAACAGTCTCACAGaaagttttagattaccataaggcaacgcagtgtttaaatgccgacaaacaattcgaatgcgaacactgtaaattcaagtttatgtggcaagagaatctagagaatcatattattacgtttcatactcttaaagaagccaaaacagcaaatgctgcaatcatagcgacttctaatgaacctgtaccaaccaatagcaaAAATGATACTAATATTTTTGAGTGTATGGACTGTCACCGCCGTTATAACCGCAAAGATCGTTATAAAGCTCACTTTAAAAAATTCCACGGTGAGGAATTGCAGATAACTCCAGAAAAGAAAagttcaaaagttcgcaaacagtccataacaaaaatggaaaaaatgtatttatgtgccttttgtggcctttctttttcaagcaattcaaatctcactgtgcatatgagaagacacacaggagagaaaccattcaagtgtgatctttgcgaaatgggctttccgcgttcatccgacttacaagcccaccgtcgctcacatactggagaacgtcccttcaaatgtatgtactgcgataaatcattttcgcgacaatacaaattgaatgttcacaaccgtatacataccggtgagcgtccttaccagtgctcgttttgtcagaaatcatttattcaatctaacgatttgacacttcacttacgtcggcacacgggcgaaagaccttatatgtgtgaagtttgtggtgatggttttatatgcgccacatcactcaaacaacatcaagccaaaacagcaaatgctgcaatcatagcgacttctaatgaacctgtaccaaccaatagcaaAAATGATACTAATATTTTTGAgggacaccaagaagaaaagattgatttaaaaatgtgtgttcaacagttgacacaatttgacatgaaattctcaatggtttga
Protein Sequence
MSSDIKIECLINGVRYKCRTCFDPGRSFYSLRDEYSNSKTWCDLLRDITQIQTNDEDLLPKTMCCKCLEKLKSSYDFILQIHDVNKKYSELLDSCKDPLQEGLLNEVDKFTDCLAESTIDLPLNQYIPEIKIEEDFPDPYNIVLNNNQCAEDSKAKLENEGLPEAEDSLGNINTDDFKSSDELGERKKNRNIDENYNDNRNDYSSSSSDESDYVPLKKLKKEKCNNSSSQLIKRKKGRQAPEYYDKIEKVNDRFVCLICQKTFSLRKDCGRHIASIHLRQTMFPCEICGQRFSRKDKIQHHIKRMHSGGIVYPPKHKEWLFGDRLYYKPSTWLLVQCKLCDAIYKTSKELRQHLTNHSNFDTLHDLELSSNVIQHLFGNMIDLNLVKESICKDIREENWCKYYTVLNKYGYEMSISDTEVEDMNEENLESPKKYKCDLCAKEFSFQYQVFSHLKEVHGENEISLKCNLCKLEFISIKMYEQHSKTHCRNRNKVLVCAQCPAKFVWPDNMKNHNCATKMLLLSTESNKKPLKCSICDRKFEVKTKYEKHLETHKDGRTVSSKTIIRCGLCAHSFDKLRNLRQHMPLHSDGKTGIDFKGCIYVKRFERAKSIDFALLQQEIQNAYSKSQISRFYRAINRDGDEMDILDSDSDAEEAKDNDEALENEYKCELCSAVFRRRKLLLNHQHECHNGVPLPFTCNDCTQQYVSNDLLQQHLVRDCWNEHRRIAQQCDYCNARFIWPNNLIKHKEIQHKNQKQPKPKRGSTLKCEYCEKVFIWPKDLVRHKKTHTEGKKFTCPHCDRKFQRKDNLLAHIRIHCPDGISTVSNPGKSIDYILPHLIKPHGCKRIKCMICFSEHNRIRDLRSHLRTHRYAVNFEKRRETESLEVISSQLYPDEPVSFTEDVLIKRITSDIVAENNLERFYSITNENGYEVSLDSSETESDSDDNDNDNDKEVNKSKRVYKCDLCPHLSFSRKYKLFAHQNNKHTWEEARHICIHCNGRFISSYMLQLHYKNQCKNSKKRNFCRRCPLRFMWKSNMKAHITMEHGHEIDLTRGHECFLCQEKFFPQKELQRHLITHHSADAELHYCLLCPKTFFSVEHLNQHLSRHRLTTDDVKSVESIIHSTCWPNGEKVIKCKICSQTFDTMANLREHFSPKNSQNMCANHHSFANYSAINQKGFELHLELDSETEVEAEVQHKRGQKNIEYPYNCCMCSMSFKRKYQIAQHQRSMHNFEMLTLKCDHCIFRTVSQKVLDYHKATQCLNADKQFECEHCKFKFMWQENLENHIITFHTLKEAKTANAAIIATSNEPVPTNSKNDTNIFECMDCHRRYNRKDRYKAHFKKFHGEELQITPEKKSSKVRKQSITKMEKMYLCAFCGLSFSSNSNLTVHMRRHTGEKPFKCDLCEMGFPRSSDLQAHRRSHTGERPFKCMYCDKSFSRQYKLNVHNRIHTGERPYQCSFCQKSFIQSNDLTLHLRRHTGERPYMCEVCGDGFICATSLKQHQAKTANAAIIATSNEPVPTNSKNDTNIFEGHQEEKIDLKMCVQQLTQFDMKFSMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01236971;
90% Identity
iTF_01236971;
80% Identity
-