Pame040252.2
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- lolal
- Assembly
- GCA_943735935.1
- Location
- CALSEV010001116.1:302098-319140[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-19 1e-15 58.4 0.0 2 45 543 587 542 587 0.97 2 2 5.5 1.6e+04 -3.1 0.7 3 11 620 628 620 631 0.82
Sequence Information
- Coding Sequence
- ATGGAACGAGATCTAAACAGCGATAAACAACAAGATAAACGGGTAATGCTAGAACTAAAAAAAGAATTTTATGAAATAAATGGTAAACATCATGTTATAaccctttttacaacaaatccatgtcaacatccaatcgttatattaaaagatgttcagtatgatgatcttaaaacaatggttgacttcatgtactatggggaggttaatgtctcgcaagagcaactgccgcatatattaaagacggcagaaatgcttaaaataaaaggtctcgcagaaatgCCCACCGATCCTGCCAATTTAACAAAATCCGATAGTAAGACATCGAATGATGCTACAGAATTGGTCGGTGGTggtggtaatagtggacagttaggaggtggtaatagtggtggtggtagcagcgcaggcggtggcaacagtagtagtggtggtttgggtagcagtagtggcggtggcagtgttagcgattcaatatggggcagcaccgaatcacaatttcaacaacaacagcagcagcaacaacagcagcaacaacaacagcagcaacaacatcaacagcatcatcaacaattacaacaacagcaacaacatcatcatcaacagcaacaacaacagcaacagttgcacacacaattgcaaaatagtcaaacacaaacctcacaacaacaacaacagcaacaacatcatcagcaacaattaagacgcacaccgtctccattaggcgctggcgcctcaccagccaccagacgaaaacgtctaagAAAATCCTCAAATAACGGATCCGGTGAACGCAATAACTCCGAAGATCATAATACATCCTTGGATGCTGCCACAGCTGGAGGTTTAACCCTATCCCAAATGAGTCAGATGTCATTTAGTGGTGCAGCTACAAATAGTGCTCTCAGTGGTTTAGCTGCTCACTCTTTGCACACAGCAAAATTACTTAAAGAAACCTCTAATAATGACTTGGAAACAAATCCTCAAGATTCCGATAGTTTAGACGATACACATGGTCACGTACATATGCAAATTAAACCCGAAGTTGATATGAGTGGAGTACCACAGTCTATGCCATTAGATATATCAGGACCCACAACGCCCTCGGAACATGATGCTCCCAATTCACAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTCGCTGTCATCATGTCCTACCAATTTAattggcaataacaacaatcaaaatacaaataacaacaacagctcgagtagtgatcaacagcagcagcaccaacgccagcaacaagaagccgttgctagtcaacagcaacagcagcaacaacacttgcaacaactacaacaatatcagcaccaacaaaactcggcctattcgccacaaatcataacggtcagtggttatacaaatgcagcagcagctgcggtagcagcggcGCAAAATTTATCACCGCCTTCGCCAAACGATGGCAATATGGTGCAATCAGTGTATAGCCAAGGACCAACGCCCACCCAGTCACCGGTGGGCAATGCATCGGGATCCGGCGGTGGCAGCAGTATGTCCGGTGGCAATTCAGCAAACAATGCCAATATCAAGCGTAAGCGTTCGGTTAATCCACAAGGTGACGAAAATTTTATACGGGCCCTGGAGGCAGTGCGTTCGGGAGGTATAGGTTTTTGTAAAGCGGCACGTCTCTATGGCGTTAACAATCGTACTTTATGGCTGGAATATAAGAAACGCGGTTATCCTGTGTCCAGGCCCAGTATAAAATCACGTGTTGTCAAGCAAGAACCGAATCTCTCACCTTCCCCTACACCACCTGCCAATGCCACAGACGATACCAATGAAAACTACGATCATATGGCAGCAGCAGTGGCGGCTGCACAAACAGCCGCTCTTAACATGCAAATACCACCGACTTCCGAGACACCAACACCCTCGCTGATGTGTACACCCCATCATGGTGGAACAGCCGCAGGTGCTACCACACATCCTACCATGGGTGTTATGAGTTTCTTGGATACCCGCCACATGGACTTCCCAGCCAGTCTGCATTCAATGTCGCGTCAGCGTTACATTGATGCCGGTGCTGGCGGTGGTGCCGGTGCGGGTACAATTAATGTTAATCCGGCAGCGGCAATGAATTTACAGAGTATTAATTTTAACTCAATATAG
- Protein Sequence
- MERDLNSDKQQDKRVMLELKKEFYEINGKHHVITLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKTSNDATELVGGGGNSGQLGGGNSGGGSSAGGGNSSSGGLGSSSGGGSVSDSIWGSTESQFQQQQQQQQQQQQQQQQQHQQHHQQLQQQQQHHHQQQQQQQQLHTQLQNSQTQTSQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERNNSEDHNTSLDAATAGGLTLSQMSQMSFSGAATNSALSGLAAHSLHTAKLLKETSNNDLETNPQDSDSLDDTHGHVHMQIKPEVDMSGVPQSMPLDISGPTTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPTNLIGNNNNQNTNNNNSSSSDQQQQHQRQQQEAVASQQQQQQQHLQQLQQYQHQQNSAYSPQIITVSGYTNAAAAAVAAAQNLSPPSPNDGNMVQSVYSQGPTPTQSPVGNASGSGGGSSMSGGNSANNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPANATDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHGGTAAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGAGGGAGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01236810;
- 80% Identity
- iTF_01235884;