Pame040248.1
Basic Information
- Insect
- Pollenia amentaria
- Gene Symbol
- -
- Assembly
- GCA_943735935.1
- Location
- CALSEV010001116.1:230094-231962[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-07 0.00049 21.0 0.0 11 39 406 433 400 437 0.83 2 4 2.3e-14 6.8e-11 42.9 0.0 5 44 453 492 450 493 0.93 3 4 0.017 51 4.9 0.0 27 38 522 533 518 539 0.88 4 4 9.2e-15 2.7e-11 44.2 0.0 4 41 561 598 561 600 0.92
Sequence Information
- Coding Sequence
- ATGAATCATTTAAAGTGGATGGGCCATTCGGCCACAATATTAGATATACATAAAAATCTAAGAGCAGATTTAAAGAGTTGTGAAGTGACGTTGGTGGCCAAGGGACATTGTGTTAAGGCTCATCGTTTTGTTTTATCATCGTGCAGTGATCTGCTACGGTGCCTCCTTACCGATGTGCCCATTGGCCAGGAATGTTGTGTAATGGTACCCGATATAAAGGGTCATTTGTTGGATAATGTATTGGCATTTATATATTTAGGTGAATGCTCCTTATCATCAACAAATTTATCCGAGTTTTTAGAAGCCATTAATATATTGGGCATTAAAAGTGCCATAAGTTTCGAATGCAATACAAATGCTTTGCAGACAACAGCTCAGAGTAGTAGTCAAAGCACCATTGCTTTAGATAGCAACACAACCATGGCGCCTGTAAGTAGTAATACCTTAGCGACTGCGCAGGTGACTGTTGGGGGTTCGGGCGATACATTGCATCAAGAAGAAATCATTGAAACGCAGAGTGTAATTCATAATGAAGCTCATACGGTGAATGCAACTGGCACAAATAATTCGGGTACAACTAGAGAACTTGATTTTTTAGATGTATATCACGAACCTGAACATAAAATTACATATTCAATAGAACACGTTCCTGGGTCTACAGCTGGAAATGAGTTTATTTTGACCGAAAGCTCTGGCACTTTCACTTTAACACACAGTGGTAAATTGGAACCAACCACATCCCCGGCTGAGTCCTCTAATATGGAAATAACAGAGGACGATGGCTGTGATACACATATAATAGAGGAATACAGTAGCGGAGACGAACCTTTAATACAAATAGGAGAAACTGTGCAAGAACCGCATAGTCTAACTGTGGCTCAGACAACACATCATCAACAACAACAGCACACAACACAAACTCAAACATCAGCTACGGCTACAACTGCAACTTCTATTATACATGTTAAACCAAAAACGAAAACCCTCAAGCTAAAACACCCGCAAGCATCACAAAGGTTAATCACCAAAATGGAACAACTTTCCGAGGATACAGCTAGTGATGATCCCATTTCGATACTACAAAGCTCAAACGAAAGTTTTACTTTGCTTAAAGATGCCTCAACGATGTCCACAAGTAACACTAGTCATGACGAGTCAACAGATTTTTCTATGAACAACTCGTGTACATCGGCAGCCGAATTAGCCTATCAAGCTATGGTCACTGAGGGTATGTCTTTACCAAAGGCTGCCGATATATTTAATGTTTCCAAAGCGGAACTATGGCGACGGGTGCGTAGTACTGGAATTGAGCAGTTAAATAAATCGGTTAAATTAGATCCTGATAAGATTGATGTTTTAGAATTGGCCAGTAAGGCAGTAATAAACGAGGGCTTATCTTTACAAAAGGCCGCCATACGCTATGACATCTCTAAAACCGTCCTGTGGCGCCGGGTACGCAAACATCCACAGTACATGAAGACAGCACGAGAAAATCCAATTATAACAAAAGCCTATGAGCGCTTAAAATCTGGAGAATCGCTTAAGAGCATATCACAAGACTTGGATATACCCATGTCAACTTTGCATCGGCATAAGGTTCGTCTCTCACAAACGGGGCAATTGCCTGATTTTGTAACATGCAAAAAACGTGATAGCATGTCCAAAGATGATTTAAAATTGAAACTTTCGAAAGCAGTACATGCTTGCGTACACGAAGGAATGTCGCAAAATCATGCTGCTAATTTATTCCAAATTTCGAAGAGTACATTGTGGCGACATCTCCAAAAACGTGTGGCGGAAGCTGAGGCAGCTGAGACTGAATCTATGGGCGATGAAGATGAAATTAAACAAGAAGTAATACTTTCATAA
- Protein Sequence
- MNHLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLTDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINILGIKSAISFECNTNALQTTAQSSSQSTIALDSNTTMAPVSSNTLATAQVTVGGSGDTLHQEEIIETQSVIHNEAHTVNATGTNNSGTTRELDFLDVYHEPEHKITYSIEHVPGSTAGNEFILTESSGTFTLTHSGKLEPTTSPAESSNMEITEDDGCDTHIIEEYSSGDEPLIQIGETVQEPHSLTVAQTTHHQQQQHTTQTQTSATATTATSIIHVKPKTKTLKLKHPQASQRLITKMEQLSEDTASDDPISILQSSNESFTLLKDASTMSTSNTSHDESTDFSMNNSCTSAAELAYQAMVTEGMSLPKAADIFNVSKAELWRRVRSTGIEQLNKSVKLDPDKIDVLELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIITKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01237802;
- 80% Identity
- iTF_01235877;