Basic Information

Insect: Polistes metricus
Gene Symbol: -
Assembly: GCA_010416925.1
Location: QUOH01000026.1:169244-171607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0027 0.18 12.0 0.7 1 23 377 400 377 400 0.95

2 10 6.3e-06 0.00043 20.2 0.5 1 23 406 428 406 428 0.99

3 10 1.2e-07 8.2e-06 25.7 0.3 1 23 434 456 434 456 0.99

4 10 0.23 15 5.9 1.8 1 23 462 484 462 484 0.98

5 10 5.3e-06 0.00036 20.5 0.2 1 20 490 509 490 510 0.96

6 10 0.03 2.1 8.7 2.4 1 23 519 539 519 539 0.94

7 10 1.3e-06 9e-05 22.4 0.5 3 23 547 567 546 567 0.98

8 10 0.00013 0.0091 16.1 1.4 1 23 573 595 573 595 0.98

9 10 0.0034 0.23 11.6 2.7 1 21 601 621 601 624 0.96

10 10 0.27 19 5.7 3.7 3 23 632 653 630 653 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0027	0.18	12.0	0.7	1	23	377	400	377	400	0.95
2	10	6.3e-06	0.00043	20.2	0.5	1	23	406	428	406	428	0.99
3	10	1.2e-07	8.2e-06	25.7	0.3	1	23	434	456	434	456	0.99
4	10	0.23	15	5.9	1.8	1	23	462	484	462	484	0.98
5	10	5.3e-06	0.00036	20.5	0.2	1	20	490	509	490	510	0.96
6	10	0.03	2.1	8.7	2.4	1	23	519	539	519	539	0.94
7	10	1.3e-06	9e-05	22.4	0.5	3	23	547	567	546	567	0.98
8	10	0.00013	0.0091	16.1	1.4	1	23	573	595	573	595	0.98
9	10	0.0034	0.23	11.6	2.7	1	21	601	621	601	624	0.96
10	10	0.27	19	5.7	3.7	3	23	632	653	630	653	0.96

Sequence Information

Coding Sequence: ATGATCAATATGCAGCAATTGATCTTAGGACAGCAGCAAGTATCCGGTAGTAGCGAGCAACCTCAAGAAGAGGTTCAATTGACCGAGCTTTTGCCAGTTAAACAATCGCGTATTAGAGAGAACAATGTTTTCAAGGATATCGATGCTACCGACGCGTTAAAAGCATTAAGAAGTTTTTCCGGTAGTTGCAACGACGAGGAACAAGATTACGGATTGAGGATTTTTGacgataacgaaaaaaatgcGGAAGACAACAAGgttgaaaggaaaataaaacgtGTGTGCGGTattaaaaggaaattaaaCGTTTTGGATGCCAATGGTGcggagaaaaaattaaaaaataattccaataaTTATCGCAACGTTAATAATGGTAAAAGATCGATGGTAATGTCTAAGAAGAGAAACGTAGTGAGAAAAAATACCAAAAAGTTAACgtctaattgtaataaaataaccgTTAACAAAATCACTATTAGTGATAGTACTAATGACAAAATAACCGAAGAAGAGGATGATAATGAATTATCCGTTTTTTACGAAGAGGAAATTCCAAGTTATTTGGACTTGGATAAAACCAAAGACAGTCTTAATGACGAAGTTTACGTGTTCCGTCGTGAAAGATCTAATTCCTGTTCTCTATCGCAAACTTCTAGCGAAGTTAATCACGAAAATACGGACGAAATGTTCGCGGATGATTACGAAGGGACCGAAGTAATcctgataaataaatttagggATCGTGCAAAGAATTTAGATATTAGTACGGACGAATTGAACTCATCTATATCGACAGACGAGGAAAGAATAATACCAATGACCGAGGataatcaagaaaaagaattaagatTAAAGATAGACGCGATTATCCAGGCAAATTTGTTGGTAGAGAGGGAGAACAACAACGTCGTTAGTCGAGCTagaacgaaattaattaaggAAAAGAATTCGTCTAGATCATCGCAATCGTCATTGTCACCGTCATCGCCACCATCGTCTCAACTGTCGACAATAGTAACTGGCGAGATTCAGAATAGTTCAAACTTCAGCGACGAGGATATTAAAAGATTGGAAGAGGACGTTGGCAATGAATATCATAATCAAAATCATTCATtagagaagaaatattgttgtGTAGTTTGCGACGCACGTTTTAAGGGTAGCGGTGGCCTGAGAAATCACTTCAAGGTAGTTCACGGTGCCGGGCCAGTTTTCAAATGTGACGAGTGCGGCAAGGAGTTTCCATTGAAGGAACGTTTAAAGCTACACGTTCGAACCCATACCGGTTTTAAGCCTTACAAATGTCCGGAATGCGACAAGAGCTTTGCTAGGGGTGGCCAATTGGTTCAACATCGTCGTACCCATAGCCAGGTAAAACCCTATCATTGCGGCCTTTGCTCGGGTACTTTCACTTGTGCGGCAAATCTCGCGTTGCACGTTAAACGACACAACGGTCAGAAGGATCATAAATGTGAAATATGTGGCAGGGGTTTCGTTAGGCGTGACGCTTTGAAGAAACACTTGGAGTGTCTGCACCGTGACGTTAAATCGTTCCTATGCGTTATCTGTAATAAAACTTTCAAAGGACATTTACCGCAGCATATGAGGACTCATGCGCGCGACAGACCACACGGTTGTGCCACTTGCGGTCAGAGATTTGCCCAAAAATCTCAATTAACTGTCCACCAACGTACGCATTCGGGACAAAGACCGTTCCGATGTTTGGTATGTTGGCAAGCCTTCGCTCATTCCACCGCATTGAAATTGCACACGAGAAGGCACACCGGGGAAAGACCGTTCAAGTGTGTCGAATGCAACGCCGGTTTTACCCAATTGCCGCATTGGAAAAAACATATGAAATGTATACACGGTAGAAGCGAACCGTACGGTTGCAAACGTTGCAAGAGTTTTTTCCGAATTAAAAGTGACCTAGAGAGTCATGAGAAATCATGTCACCCAGAACTCGATGGGGGCCCCGATATCGAAGGTTCTTCCTCGAATTCATTTGGTGCCGTTTCGTCGAACGATTCCAACGATAAAGTTACCAATACTACCAAATACAAAACTATGACAGTAGAAAGGATGCGTCTGTTACTGGCCGTACTATTGAAGAGGATCAGCAAACAAGAAAGATTAGATGAGTTGGGCTTCGGTAAACGTCTTATCGACAAAGTCCTACAGGATTCTCTGATATCTGCTGGGAAGGATCCTGCAACTGGTAAAGGTCTAACAGAATTAGAAATTCTTACCAAAAATCTCGAAACTTTTCTCGAGTGGACAGTACCGAAGGAACATTGGGAAAATTTTcgtagaatgaaaaaaagtccCGAAGACATCTTGGAAACTCTCACGGCTACGTAA
Protein Sequence: MINMQQLILGQQQVSGSSEQPQEEVQLTELLPVKQSRIRENNVFKDIDATDALKALRSFSGSCNDEEQDYGLRIFDDNEKNAEDNKVERKIKRVCGIKRKLNVLDANGAEKKLKNNSNNYRNVNNGKRSMVMSKKRNVVRKNTKKLTSNCNKITVNKITISDSTNDKITEEEDDNELSVFYEEEIPSYLDLDKTKDSLNDEVYVFRRERSNSCSLSQTSSEVNHENTDEMFADDYEGTEVILINKFRDRAKNLDISTDELNSSISTDEERIIPMTEDNQEKELRLKIDAIIQANLLVERENNNVVSRARTKLIKEKNSSRSSQSSLSPSSPPSSQLSTIVTGEIQNSSNFSDEDIKRLEEDVGNEYHNQNHSLEKKYCCVVCDARFKGSGGLRNHFKVVHGAGPVFKCDECGKEFPLKERLKLHVRTHTGFKPYKCPECDKSFARGGQLVQHRRTHSQVKPYHCGLCSGTFTCAANLALHVKRHNGQKDHKCEICGRGFVRRDALKKHLECLHRDVKSFLCVICNKTFKGHLPQHMRTHARDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCVECNAGFTQLPHWKKHMKCIHGRSEPYGCKRCKSFFRIKSDLESHEKSCHPELDGGPDIEGSSSNSFGAVSSNDSNDKVTNTTKYKTMTVERMRLLLAVLLKRISKQERLDELGFGKRLIDKVLQDSLISAGKDPATGKGLTELEILTKNLETFLEWTVPKEHWENFRRMKKSPEDILETLTAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01233179;
90% Identity: iTF_01232573;
80% Identity: -