Pmer003782.1
Basic Information
- Insect
- Polistes metricus
- Gene Symbol
- -
- Assembly
- GCA_010416925.1
- Location
- QUOH01000003.1:7970895-7974754[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.001 0.07 13.3 0.2 3 23 503 525 502 525 0.95 2 10 0.0016 0.11 12.7 1.1 1 23 531 555 531 555 0.98 3 10 4.6e-05 0.0032 17.5 0.6 1 23 561 585 561 585 0.96 4 10 0.00037 0.026 14.7 1.5 2 23 592 615 591 615 0.96 5 10 0.004 0.27 11.4 3.9 1 21 622 644 622 646 0.95 6 10 7.2e-05 0.0049 16.9 0.4 2 23 654 677 653 677 0.95 7 10 2.9e-05 0.002 18.2 1.8 1 23 683 707 683 707 0.93 8 10 7.7e-05 0.0053 16.8 0.7 1 23 713 737 713 737 0.94 9 10 0.00025 0.017 15.2 3.5 1 23 743 765 743 765 0.99 10 10 5.8e-05 0.004 17.2 1.2 1 23 857 882 857 882 0.96
Sequence Information
- Coding Sequence
- ATGTGGACCCCTAAGAAGGAATCAAAGTTTCGGGGTAGTCAAATGTCTCGTAAAGAAGtagctgctgctgttgcttgTTCAACAACATCTTCTAAGTCAAAACAATTCCCGCGATTCTTTCGTAACCGTCGAGCATCGTCGGTTTCTCTTGTGTGGCCATACGTCGATGTAAACGCCGGTTCGGTGTTATCCGAACAAATAGAAACGAGTTCGTTGACGTCTTTGCCGGATGAAAGTAAAAGACTGTTaatcgaagataaaaataataaatttaagacGAAAAATCACGAGGAAGGTAACGGGTATACGGAAATAGTTTGGTGTTTGGATCATTCATCGGCTTTTCTTAAATGTATACCTTCAGAAATTATTACTGGTGATGTTGATGATCCCGAAGAAAATACAGGAGACGTAGAGACAGTTGCCAGCATCGAAAAATGGTTGAAAACGAGAACGGAATCCATCACAAGCATGGACTTGGATGTTGCCAAATCGGAGGTAGAAGAAAACGTAGAAGGATATTTAACCAACGATTTGACACATTCTTTCTTACCGAAGGATCCTGACGCCTTGTCCATTGACATTGATTTGTCCGATAAAAAACTTAACCTGAGTTACGAGCATTCCATATTGCAAGATTTTCAGACGGAAAAATTGTTAGGGGTATgcgaaaaaaatgatgaatttaTATTACCCGAATTTAGGTTGGATCAACTTGATCCTTTGGCTCTTTCACCTGACGATATGATGGTCGCTGGGGAAATCTTACCGTCCACCAGTGGTCCTACTTCTTTGACTACGCCAAATGAACATCTTACCGATACATCTGACAAatcggaaaaagaaagagtacgGTTGATAGATCGAACAGAAGAAACTGAAAATCATACTTCTATGGTTGATTCCACAGAGTTGACCAATTTGCCTATCGTCTTTGAAAACATTGACGTTATGCAAGATACACCTGAAGCTAATAATATCGTTTCTTCTCCAAAAAGTACATCCAATTCTTTTACCGATGTTCTTAATAACGATGACGTTATAGAAAATACAACAGACGTTATAGATGTAGCTAACTCTGGCAATAATATTATGCAACAATTGAAATCCAAGGCAAGAATCAAATTGGAACCAAgaatcattaaaaaacgtCGAAGGATATCTGACAAATTTgacgaaaaaattaaatccaaGGAAGGCGTAATGACTGTCGTTGCCATATCGACagataaaatttctaatatgacacaaattgttattaatactGGTACGGAAGAACAAATTTATCAGGGTAAGACATCAGAACTGATAGAAGCTACAGGAAATTTTCCTAAATTGCCAAGAATTGAAACTTCCCCAGCTTGGAGCGGATCCTTAGAATGCAATTCTGAAATGAATACTAGCAGTCAACACGAAATGATAATATCTAATGCTTTAGCGGAATTAGGGGTTACGGATGACAATTTGCAACCTGTTACGGTAAGCGAACATGGGAAACTTTGGTTATGTCCGAAAGAAGGTTGTGATAAACAATTCAATAGACTGTATGCTTTAAAAGGACACTTGCTATCTCATTACGGAGTGAGACCATTTAAgTGCGACAACGAAGGATGCACTTGGGCATTTTATTcggaatttaaattaaaacggCACAAAGAAACTCATTCGAAACGTAAGGATTACATTTGCCAAGTAGAGGATTGTAATAGAAGATTTACTaccatatataatttatggaGTCATCAGAAATTACATACTCGTCCTAATAGAATTAAGTGTCACGTACCAAATTGTCAGGAGAAATTTCAAACCAAGAGAGCACTGGAGTTGCACATGAGATCGCACGATCAGAGTCATGCACCTTACGTATGTAAACACGAAGGTTGTGGTAAAAGATATTATAGTAGTAATGCATTAACATCGCATCAAAGGTGCCACAGTTACAAAGAAATCGATGTTAAGTGTTCATGGCCCGGATGTGGTAAGGTATTTGACAAACCATGTAGACTGAAAGCACACATACGTTCTCACACCGGGTGTAAGCCATATCTTTGCACTTTTCAAGGCTGTCAGTGGGCTTTTTCATCATCCAGTAAGTTGAAAAGGCATCAAAAAAAGCATACTAATGAACGGAAATTTATATGCGATGTTGCTTCCTGTGGAAAAGCCTTTATGAGATCAGAGCATCTTAAAGAACATAGATTGACGCACAAGGAAGGGAGGTACTTTCAATGTTGCATATGCAACACACAATTTTCTGCAAAAAGTAGTTTGTACGTACACATTAAGAAACatcaaaataaagaagagatagaaagaaatatttctaaacaaaCGTTCAGCGAATCTTCGAGTATAAAAAATCGTTTTATAATGACTGAATCTCATTGTTCTAAAGTAAATCGTTTTGTAacgcagaaaaaaaaatctatcgaaTTTAACAAAGAACTTATTTCCCAGAATGCTTCCACACCAGTATTGTCTCAACCGTGCGAATCGAGTTTAAATAACGACGACGAAAATCAAAGCTTAGAAATGATATCTAATCAAGACGaaattaaaacgttatatCATTGTCCTGTAGAAACATGTACAAGATCGTATAGTACAAAAGCGACGTTAAGAGCGCACATGTCAAAAATACACGGTACACCTATCGGAGATTGtgataaatcattaaaaagtAAATCCACAGATGTTATAGATTTTAACAATATGGACTATGTCTTATATGCTCCACCTTCTTCAGCATCGGAATCTACCGAACAAATGGTCATGGTAACGCCATGCGATTCTGTAGTTGTTACCACCCCTTCGGAAATGGATTCTTTGCCTGAAACGCAACCGCCTCTCTTAGATATCGTTCTAAGAAACGATTCTATTCACGAAAAtccaacgaacgaacaattATTGCGATCTAACGTTAAAAAAGATCACGGCTCCGCGAGGacaaatttaacattttcggacgtgtgtaaattaaaaacagaAGGTGCGTCGATGAGCTCCATTGCGGGAGCATCGGATGTAACATTAGGTGCTAGTGACATGAAAggggaattattatttaccgaAGAATTACCATCTATGTATTATCAAGACGACGTGGGGGGAACGGAGTATCAAGTTTTATTACTTGATTCGGGACCGTCGGAAAGTGCTGTAAATTTGCGCGGTCTTGAATGA
- Protein Sequence
- MWTPKKESKFRGSQMSRKEVAAAVACSTTSSKSKQFPRFFRNRRASSVSLVWPYVDVNAGSVLSEQIETSSLTSLPDESKRLLIEDKNNKFKTKNHEEGNGYTEIVWCLDHSSAFLKCIPSEIITGDVDDPEENTGDVETVASIEKWLKTRTESITSMDLDVAKSEVEENVEGYLTNDLTHSFLPKDPDALSIDIDLSDKKLNLSYEHSILQDFQTEKLLGVCEKNDEFILPEFRLDQLDPLALSPDDMMVAGEILPSTSGPTSLTTPNEHLTDTSDKSEKERVRLIDRTEETENHTSMVDSTELTNLPIVFENIDVMQDTPEANNIVSSPKSTSNSFTDVLNNDDVIENTTDVIDVANSGNNIMQQLKSKARIKLEPRIIKKRRRISDKFDEKIKSKEGVMTVVAISTDKISNMTQIVINTGTEEQIYQGKTSELIEATGNFPKLPRIETSPAWSGSLECNSEMNTSSQHEMIISNALAELGVTDDNLQPVTVSEHGKLWLCPKEGCDKQFNRLYALKGHLLSHYGVRPFKCDNEGCTWAFYSEFKLKRHKETHSKRKDYICQVEDCNRRFTTIYNLWSHQKLHTRPNRIKCHVPNCQEKFQTKRALELHMRSHDQSHAPYVCKHEGCGKRYYSSNALTSHQRCHSYKEIDVKCSWPGCGKVFDKPCRLKAHIRSHTGCKPYLCTFQGCQWAFSSSSKLKRHQKKHTNERKFICDVASCGKAFMRSEHLKEHRLTHKEGRYFQCCICNTQFSAKSSLYVHIKKHQNKEEIERNISKQTFSESSSIKNRFIMTESHCSKVNRFVTQKKKSIEFNKELISQNASTPVLSQPCESSLNNDDENQSLEMISNQDEIKTLYHCPVETCTRSYSTKATLRAHMSKIHGTPIGDCDKSLKSKSTDVIDFNNMDYVLYAPPSSASESTEQMVMVTPCDSVVVTTPSEMDSLPETQPPLLDIVLRNDSIHENPTNEQLLRSNVKKDHGSARTNLTFSDVCKLKTEGASMSSIAGASDVTLGASDMKGELLFTEELPSMYYQDDVGGTEYQVLLLDSGPSESAVNLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01234533;
- 90% Identity
- iTF_01232564;
- 80% Identity
- -