Pmer001742.1
Basic Information
- Insect
- Polistes metricus
- Gene Symbol
- -
- Assembly
- GCA_010416925.1
- Location
- QUOH01000006.1:1364897-1369599[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.033 2.3 8.5 1.8 1 23 307 329 307 329 0.94 2 10 0.0002 0.014 15.5 2.5 1 23 334 358 334 358 0.92 3 10 0.00067 0.046 13.9 0.1 3 23 428 449 427 449 0.97 4 10 2.2e-06 0.00015 21.7 1.3 1 23 455 477 455 477 0.97 5 10 0.0026 0.18 12.0 0.1 1 23 486 509 486 509 0.89 6 10 3.9e-06 0.00027 20.9 5.6 1 23 515 537 515 537 0.98 7 10 5.7e-06 0.00039 20.4 1.1 1 23 543 565 543 565 0.98 8 10 0.0013 0.089 13.0 3.1 1 23 571 593 571 593 0.97 9 10 1.2e-07 8.1e-06 25.7 0.4 1 23 599 621 599 621 0.98 10 10 9.6e-06 0.00066 19.7 5.7 1 23 627 649 627 649 0.98
Sequence Information
- Coding Sequence
- ATGGCGGGGGTCTGTCTGTACGATTCTACTATTTGTCGGCTATGTGCAGAAGATAATAGCAATGGAGAATTATTGTATAGGGACGAGGGTGATGATTCCAATTTAAGTTCTATGGTGAATCGCTATTTACCATTAAAGGTACGAatgATTCAAGATGATGGGAAATTACCTAGAACAATTTGTCCTGGCTGTAATATTCAGCTGGAGTCTACTGTGCAATTTTTTGAATTGTTGGTGGATGGACAGcgaaaaatacgagaaatgTGGAAACATCAAGTCGAATTGCAAAGAAAAGCAGAAAGAGAACGTATACGTGTTGAAAGACAAAGCGCAGAAGTTAACACAGGATTACCAGATTCGGATAACGacataagaaataatgaagataatcaattagaaaagcaaataatcattaaagTACTGTCCGATGGGTCTTTATACACTACTGAACATGAAATGAGTTTGCAAATGGAAGGTTTAAGTAAaccaaaacgaaaaagaggCCGTCCTCCTAAAATTCATACTGATATAGGATCTTCTAAGataattataaaagaggACATTGGGGAAGGAGTAAGTcaagaagaggaagataaaCAAGAGGAAGATCTTGATGAAATAGATGGTGATGGTAGACGTCGTAGAAAGCGTAAAGTTCCTAAAAGgttTATGGAAGCTGTTCAAGGCAAAGaattagaaagaatatttaaagaagaagGTGTTATAGATgaagaagaggatgaagaAGCTGACCACTTCGAAGATTCTGAAGAACGAATAAATGTAACAATTCCAGATGGTCAAGAAGagaTAATCGGACATTTAGAAACTGAAGAAGGAAAGGATTTAGGTGAATTAGTGATTGTAAATCGTGGAAGAGGTCGTGGTAGACCGAAATTGCGACgtcgaaaaaacaaatttacttGCCAATATTGTGGTAGAGGTTTTCTGCAACGTAGTAGATATATTGTACACAAGAGTTAtcataaaagtttaaaatacGAATGTAGAGAATGTAAGAAGTTATTTACAAACaaagataatttttcattgCATCAAAAAATGAGCCAACATACGGGATGCAGTATTACAGAAATTAACGATGAACatgataataatcatcaaaaaccattaattgaaaatacaaatacaatatCAAATAATGCATCGCCAAATGAAACCAAGAATTTAGGAATTACGTTGACAAACAATCAAAATGTGGAAGTAGTCACGGAGACTTTAGACAAAAATGTAGCTAATAATccagatataaaaattttatgtgGACAATGCGAAAAACCATTTTCGACGAAAGAATCatatgaattacatgtcaaaaTAGTTCATGAAAAcgaaaaactatttttttgtaacatctGTAATAAAAGTTTTGCATATCAAACTAATCTAAAAGGACATTTGCTAACTCACGAGGGAAATAAATCAGATAAAGGATATCCTTGTGATATTTGTGGAAAAGTATTAAATCATCCAAGCTCTGTTGTATATCATAAAGAAGCTGAACATAATAATGGTCGTCGTTTTGTATGTAATAAATGTGGGAAGAGTTTCAAACATAGACAGTTATTACATCGTCACCAACTTGTACATTCTGAAGATCGACCTTTTATATGCAAATCGTGTAATGCTAGCTTTAAAACGAAagcaaatttaattaatcatcaaTCTACACATActggagagaaaaaatatttttgtgaatTATGTAGTCAACAGTTTGCTCATAAAACTAGTCTGACTTTACATTACAGGTGGCATACTGGTCATAAGCCATATTCTTGTGAAGTTTGTCTTAAAAGCTTTTCTCAAAATGGTAATCTTCAAGAACACATGCGCATACATACTGGAGAAAAACCATATTGCTGTGACTATTGTGGACGTAAATTTACAACTTCATCACAATTTAAGTTACACGTTAAACGTCATACTGGTGAACGTCCATGGAAGTGCGAGTTTTGTGCCAAATGTTTCCTGCATAAAGATACATGGAAATGTCATGTCCATAGAGAAAACAAAGTTTTAGCATTAGGTGAGATACCTGAAGGTTCCGCAATTGGTGAAGTATGGCAGATTTTACCAAATTCCCAAGAAACAGATGAAAATTCATTAAGTGATCAAATGGCTCAAGTCATTACGGCCGAAGAAGCATCTGCAGATGGACTACAACAAGTTATTTATGTTTCTTATCAAGATCCTAATAACCCTAATCTATCAAGAACATTACATTTGGTTGATACTGACATGATGCGTGAGAAAGAAGGAATTGTGAGCACTCAAGGGCAATCTTTACCTCATTTGGGTgtcgaaaatgaaataatcacCGGTCATCCACATAATCATCATACAGCCAATATTTCAGATGGACGAGTAGCCATGGAACTATCAGAACCAGATCTACAATtacaaATTACAGATGAAGAAGGTAATCCAATTCCACTTTCTATACAAGATGCAAGACAATTATTATCGCAAGGACAATTTGTTAGTCAATTAAATGATGGTCAGACTATCAGAGTTCATTCAGGCGTAATGGCTCAAGAATTTTCAGGATCTTTAGGTGTTCATGTTAATCACAATGGTAATATAGCAGCAATGAATAATACTATAGTCCATGAAGTAAATAAACCAAGTACAATATCATCTATACAAACGGATGCAGAAGCAATTGTCAAAGCATTAGAAgACGAAGATACCGATGCAACAGCTGTTGCTACTATAAATCAAATGGGAGGAGAAGAGCAGGCAGAAATGTCAGATGGACAACATGCTATCGAATTTATGACAAACGATGGACAAAAAGTCCGACTTCTTACTTCGTACCATGTTGATCCATTACATCTTGCTTCAGAGTACCTGACTAttgtataa
- Protein Sequence
- MAGVCLYDSTICRLCAEDNSNGELLYRDEGDDSNLSSMVNRYLPLKVRMIQDDGKLPRTICPGCNIQLESTVQFFELLVDGQRKIREMWKHQVELQRKAERERIRVERQSAEVNTGLPDSDNDIRNNEDNQLEKQIIIKVLSDGSLYTTEHEMSLQMEGLSKPKRKRGRPPKIHTDIGSSKIIIKEDIGEGVSQEEEDKQEEDLDEIDGDGRRRRKRKVPKRFMEAVQGKELERIFKEEGVIDEEEDEEADHFEDSEERINVTIPDGQEEIIGHLETEEGKDLGELVIVNRGRGRGRPKLRRRKNKFTCQYCGRGFLQRSRYIVHKSYHKSLKYECRECKKLFTNKDNFSLHQKMSQHTGCSITEINDEHDNNHQKPLIENTNTISNNASPNETKNLGITLTNNQNVEVVTETLDKNVANNPDIKILCGQCEKPFSTKESYELHVKIVHENEKLFFCNICNKSFAYQTNLKGHLLTHEGNKSDKGYPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHRQLLHRHQLVHSEDRPFICKSCNASFKTKANLINHQSTHTGEKKYFCELCSQQFAHKTSLTLHYRWHTGHKPYSCEVCLKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVHRENKVLALGEIPEGSAIGEVWQILPNSQETDENSLSDQMAQVITAEEASADGLQQVIYVSYQDPNNPNLSRTLHLVDTDMMREKEGIVSTQGQSLPHLGVENEIITGHPHNHHTANISDGRVAMELSEPDLQLQITDEEGNPIPLSIQDARQLLSQGQFVSQLNDGQTIRVHSGVMAQEFSGSLGVHVNHNGNIAAMNNTIVHEVNKPSTISSIQTDAEAIVKALEDEDTDATAVATINQMGGEEQAEMSDGQHAIEFMTNDGQKVRLLTSYHVDPLHLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233811; iTF_01234500; iTF_01232535; iTF_01233143;
- 90% Identity
- iTF_01233811;
- 80% Identity
- -