Pmer008201.1
Basic Information
- Insect
- Polistes metricus
- Gene Symbol
- lola
- Assembly
- GCA_010416925.1
- Location
- QUOH01000019.1:3929967-3935486[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 4.2e+03 -2.8 0.0 3 20 101 118 101 119 0.75 2 2 5.1e-09 6.6e-06 25.4 0.1 9 40 463 495 462 500 0.87
Sequence Information
- Coding Sequence
- ATGGATGATGACCAGCAGTTCTGCCTTAAATGGAACAATCATCAGAGCACATTGATACAAAATTTCGACACGCTTTTAGAGAGTGGGACGCTGGTCGACTGCACGTTGGCAGCGGAGGGGAAATACCTAAAGGCCCACAGGGTAGTCCTCTCCGCGTGCAGTCCATATTTTGAGGGCCTTCTCAGCGAGCACTACGATAAGCACCCTGTATTCATACTCAAAGATGTAAAATTTAAAGAATTGAAGGCAATGATTGATTATATGTACAGGGGAGAAGTTAATATCTCCCAAGACCAACTAACGGCACTCCTTAAGGCTGCCGAGTCATTACAAATTAAGGGCCTTTCGGAAAGTAAAACGGGTGGTAGTAATGGTAACAATAAATCAGTTTCGAGGGTATCTAAAGTTGCTCCACAACCAAGGTCATCGCCTTTAAATATTTCCTACGCGTCTGCCGGTCTCACCATAGAAAGGAACAGAGTTCCTAGACAGGCAAGTTCGATAGGAGATTTGCCAGAAGACTCGCACAGTCCTCAAATACCTAAGGAACATTCTTCGAGCAGGGAAGGTTCGCAAAGTCCAAcatcaaagaaaagaagaaaacttaGAAGAAGAAGCGCAGGTGAAGATACTTCTGTAGAAAATCATGAAGCATCGAACTCAAGCGATATACCTCAACAAATGGGCGTGCCGGCACTTGCGATAGCACCTGTCGCGGACGAAAAAACGAATGCGGATCCTACGGACTCTCTCGGCAGGTCAGCTTTAATGACACAGTTGACGAAACCTGCCGACGAGATGTTGCAGATGCCTCTCGAAAATCCTGAACCGAGCGATAATCTCATTGAGCCAAAGTCCGAGTATTTGGAGGACCAGGAAGAAAGTGTCGAAGACTTGACGCTAGACGATGACATGaatgatttaaatgaaattgaacAAGACACGAACAGAGCAGGACCTTCCCATGACACGTCCCAACATCCTGGTGGGGGGGCGGGAGCGGTATCGCGGTCTCGAGGGTCGAGAGGGAATGtaggtgttggtggtggtgttggtgttggtctCGTGTTGGTCGATGGTGGTAACGTTGGCGAAGTTGTTGTTGGTGGTGTTGACGAGTGTattggtagtggtggtgatggtagtgTCGtcgttggtggtggtggtggtggtggtggtgttggtagtGCCGGTGCCACCATATGGGCGTCGCATTTCCTCGATTGTAAAAAAGTGCCGAATACTACGATGACGAGGACGactactacgacgacgactacgacgacaacGAGACGTCCTAGACCGGAAGTTGACGTAGGTGCATTACTTAAATCTCTGGCTAACAAACAGGGAAGGAAATATAGTTTAGATTCGGTTAAAATGTCATTGGAAGCTATATTGCAACAGGGCGTTAGCACCACCCAAGCATCAGAGATGTATGGTATCAATCGGTCGACCCtgcaattttatttgaaaaaattgaacgTCGTCAGGAGAAGATGGAGACAACAGCCTAACAGCTTGGTCCAGCCTAGACACTCTTAG
- Protein Sequence
- MDDDQQFCLKWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHRVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMIDYMYRGEVNISQDQLTALLKAAESLQIKGLSESKTGGSNGNNKSVSRVSKVAPQPRSSPLNISYASAGLTIERNRVPRQASSIGDLPEDSHSPQIPKEHSSSREGSQSPTSKKRRKLRRRSAGEDTSVENHEASNSSDIPQQMGVPALAIAPVADEKTNADPTDSLGRSALMTQLTKPADEMLQMPLENPEPSDNLIEPKSEYLEDQEESVEDLTLDDDMNDLNEIEQDTNRAGPSHDTSQHPGGGAGAVSRSRGSRGNVGVGGGVGVGLVLVDGGNVGEVVVGGVDECIGSGGDGSVVVGGGGGGGGVGSAGATIWASHFLDCKKVPNTTMTRTTTTTTTTTTTRRPRPEVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPNSLVQPRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01234270;
- 90% Identity
- iTF_01234270;
- 80% Identity
- iTF_01235106;