Basic Information

Insect: Polistes fuscatus
Gene Symbol: Clamp
Assembly: GCA_010416935.1
Location: QUOI01000017.1:701154-705026[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.2e-05 0.00097 19.2 2.5 1 23 165 187 165 187 0.98

2 8 0.00024 0.019 15.1 0.4 1 23 219 242 219 242 0.93

3 8 6.8e-05 0.0054 16.8 2.6 1 23 389 411 389 411 0.97

4 8 9.3e-06 0.00073 19.6 0.1 1 23 417 439 417 439 0.98

5 8 1.5e-06 0.00012 22.0 1.8 1 23 445 467 445 467 0.98

6 8 3.5e-07 2.8e-05 24.0 1.9 1 23 473 495 473 495 0.99

7 8 3.6e-06 0.00029 20.9 1.0 1 23 501 523 501 523 0.98

8 8 3.5e-05 0.0028 17.8 0.6 1 23 529 551 529 551 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.2e-05	0.00097	19.2	2.5	1	23	165	187	165	187	0.98
2	8	0.00024	0.019	15.1	0.4	1	23	219	242	219	242	0.93
3	8	6.8e-05	0.0054	16.8	2.6	1	23	389	411	389	411	0.97
4	8	9.3e-06	0.00073	19.6	0.1	1	23	417	439	417	439	0.98
5	8	1.5e-06	0.00012	22.0	1.8	1	23	445	467	445	467	0.98
6	8	3.5e-07	2.8e-05	24.0	1.9	1	23	473	495	473	495	0.99
7	8	3.6e-06	0.00029	20.9	1.0	1	23	501	523	501	523	0.98
8	8	3.5e-05	0.0028	17.8	0.6	1	23	529	551	529	551	0.97

Sequence Information

Coding Sequence: ATGGCCCTAGAATCAAATGGCAACAACGTGGTCTGGTTGAATGCAACCCGTCCTGATCAAATACAGCAGAACCAACCTATCGAACAACCGCTGAAGTGTTCCATGTTCACTCAAACTGAACAAACCAACAGTTTCACTCAAACAGAGCAAAGTAATTCTAGTTACGGAGATCAAAGACAGCAAGCAGCAATGTTTGACCCTCAACAAATTCAACAGCAGCAAGCTGCACAGGGTCAACAgtcgcagcagcagcagtccCAGCAAATGTATGTTACGGATAAAAAGGAAGACAAGTCGCAGCAGCAATCGGCTACAGCCGAATTTCCTTTTTACTATAATGTCAACATGCTTCAAAAAGTCCAGACAAACGCAGTTAGCACAATAGGTGCCATAACAACGGACGATAAAGGTTGTTACCGTTTTGATGTACAGCCTGTTGGCTATAATACGTTATTAAATCAGATGAGTATAGCTGCTGCTACAAATGCAACTTTTAAATGTGATATATGTGGTCTGGTGTTCGGTCACATGAGTTTATTAACTCATCATAAACGGATTCACAACACAACACCAAGTAATTTGCAACAGCAACCACAACAAGTAGTTGTACAAACACCAACGACAGTGACTGTAGCCACAACACCTGAAAGACCTTATACTTGTGATGTGTGTGGAGCTTGTTTTGCACTGCCTGGAGAATTAAAAAGTCACAAAACAAATATGCACCAAAAACCTAAAGTGCAAATATGTGAAGATTGTGGTAGTGAAGATCCGTGCGAACATCATCCcacaaaaatcaaaaaaaCAATTAAACCTGGTCACCATCCAGTAAAACGAAGGGGTGTTACAAGTGTTACCAAATGTCATAAATGTAATGGCACCgggattatatttattgGTAAACACGACGAAAAACTAGATTCTGGAATCAGTTCCCTCGCAAAGTGTGGCGGCTGCAAGGCAACAGGCCGCATCATCATAGGAAATGATATCAACTATACtgctattgaaaataaatttttaaaatatttcatttttgtctaTTCAAAGTCAACCTTGAGCACATCTTTTTGTAGAACTGGCCCTTTGAGGAAAACTAAAATTTTGGTCGTATTTCCAATTTCAGGTGGCAAACAAAACAGTCAGAACCAAGCGGAGAAGCCATTTCACTGTAATGTATGTGATGGTACATTCTCCCGGTATTCTTCACTTTGGTCTCATAAGCGGTTGCACTCGGGTGATAAACCATTCAAGTGCGAAGTCTGTGGTTTAGCTTTTGCAAAAGCtgcatatttgaaaaatcatgGACGAGTACACACGGGCGAAAAACCATTTAAATGCACCGTATGTGGGATGCAATTCTCGCAGAGTCCTCATCTAAAAAATCATGAAAGAATTCATTCTGGCGAACGCCCTTATCAATGCGAAGTCTGCGAAAAAACTTTTGCCAGACATTCGACACTTTGGAATCATAGGAGAATTCATACCGGCGAAAAACCTTACAGATGTAACATCTGTGGTTCTGCCTTCAATCAAGCAACGCACCTAAAAAATCATGCGAAAGTACATACTGGTGAAAAGCCGCATAGATGTGATATATGCGAGATTGGATTCTCCGACCGTTTTGCATTAAAGCGACACCGTGCAATTCATGAGAAGTACGGTCAAACCGCTCGAAatcaaaatacaaataatccAAGTAATGCGCAACAAACCAATGCGAGTAgtcaacagcagcagcaacagcaacaacagcaacaacccCAGCAAGGACAACAAGGGCAACAAGTTGTTGTAGTGAATGCAACAACTCCAGTTACTGTCAGTCAGGGTCAAGGTCAAGCAGTTATGCTCGAAGAAGTCTACAAATGTCAAGTGGCCTTCCCAGAACCCAAATGA
Protein Sequence: MALESNGNNVVWLNATRPDQIQQNQPIEQPLKCSMFTQTEQTNSFTQTEQSNSSYGDQRQQAAMFDPQQIQQQQAAQGQQSQQQQSQQMYVTDKKEDKSQQQSATAEFPFYYNVNMLQKVQTNAVSTIGAITTDDKGCYRFDVQPVGYNTLLNQMSIAAATNATFKCDICGLVFGHMSLLTHHKRIHNTTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHDEKLDSGISSLAKCGGCKATGRIIIGNDINYTAIENKFLKYFIFVYSKSTLSTSFCRTGPLRKTKILVVFPISGGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCTVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNTNNPSNAQQTNASSQQQQQQQQQQQPQQGQQGQQVVVVNATTPVTVSQGQGQAVMLEEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01514338;
90% Identity: iTF_01233847; iTF_01235213; iTF_01513657;
80% Identity: -