Pfus010150.1
Basic Information
- Insect
- Polistes fuscatus
- Gene Symbol
- -
- Assembly
- GCA_010416935.1
- Location
- QUOI01000002.1:10659388-10676389[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.4e-05 0.0027 17.8 1.4 1 23 315 337 315 337 0.96 2 17 1.2e-05 0.00096 19.2 1.9 1 20 343 362 343 365 0.94 3 17 8.4e-06 0.00067 19.7 1.4 1 23 371 393 371 393 0.98 4 17 4.9e-05 0.0039 17.3 4.4 1 21 399 419 399 421 0.95 5 17 6.6e-06 0.00052 20.0 5.6 1 23 427 449 427 449 0.99 6 17 1.5e-05 0.0012 18.9 5.3 1 23 455 477 455 477 0.97 7 17 5.7e-05 0.0045 17.1 6.9 1 23 483 505 483 505 0.96 8 17 5.6e-08 4.4e-06 26.6 2.7 1 23 511 533 511 533 0.98 9 17 4.1e-05 0.0033 17.5 6.7 1 23 539 561 539 561 0.97 10 17 3.4e-07 2.7e-05 24.1 2.9 1 23 567 589 567 589 0.98 11 17 5.1e-06 0.0004 20.4 7.8 1 23 595 617 595 617 0.98 12 17 1.6e-05 0.0013 18.8 9.1 1 23 623 645 623 645 0.98 13 17 2.1e-05 0.0017 18.5 7.5 1 23 651 673 651 673 0.98 14 17 0.001 0.079 13.2 8.8 1 21 679 699 679 701 0.94 15 17 7.7e-06 0.00061 19.8 0.4 1 23 707 729 707 729 0.98 16 17 0.018 1.4 9.2 4.5 1 23 739 761 739 761 0.98 17 17 3e-07 2.3e-05 24.3 1.3 1 23 767 789 767 789 0.97
Sequence Information
- Coding Sequence
- ATGAACAGCGAGCAGCATGCATTGCCAGCGACTACGCAGGCTCAACAAGAGATTCCAGTTTCTCTTCCTGGCCTTAATCTAGACGCCCATATCCCGACGAGCGTTAGTCACTTGCAGGCAGCACACGCGCAAATGCAACAACAAATGCAGGCACAACAGCAGCAGctgcaccagcagcagcaacagcagccccagcagcagcagcaacagcagcagcaatcTCATCACCAAATGCAGAATCATCAAAATGCACAGAACAGTGGGCCGACCTCACATAACCAGAACGCCCAAAGGGATGACAACAAAGTCAAGGACGAAGGTGGCAGCTGTACCACCGAGCGCTGTAGCGATAATCAGGTTCACTGTCAAGTTCAATGCGATCTTCAGTTACAACCACCGCAAGACTTACAACAGAGCTTAatgcaacagcagcagcaacaacagcagcagcagcagcagattGGCGTGAATATAAGCGGGAATTCGTCGACGGAGGGTAGCAGCCAAAATAATTCGGAAAAAccggagaaggagaaggagttGCGGCAGCTTAATATGACGCAatttcAAGTTCCAGACTTAAAACCAGGCGGTCATATGATGGACGTAAGAACAGCCGATGGTTCAGTAGTCAAAATAAGTGCGGGGAATGAACAAGACTTAGCTAAAACACTGGGTGTTGAAATGGTACAAAATATGTACAAGGTAAATGTCGAAGATATTAACCAGCTTTTAGCGTATCACGAAGTTTTCGGCAAATTGCAAAGTGAAATTGCAGCCGGTACTACTTTAGTAGGTAGTACAGTTCCTACGCAAACAGTTACCACGATTCAAAATGGTACGCCAATAGTGCAGCAAGTTCAGTTGAATAAATTTGACATAAAGACTAGCGATGGTGAAGCTACGCCGGGTCCAAGTGCATCGCCAGTTTCGGTCGGCAGTCATGCTTGTGAGATATGTGGAAAGATATTTCAGTTTCGTTACCAGCTTATAGTACATCGTAGATATCACACAGAAAGAAAACCATTTACATGTCAGGTTTGCGGGAAGGCATTTTCAAACGCTAACGATCTAACGCGTCACGGAAAGTGTCATTTGGGTGGATCGATGTTTACGTGCACTGTATGTTTTCACGTCTTCGCGAATGCACCTTCGTTGGAACGGCATATGAAAAGACACGCTACTGACAAGCCTTACAACTGTACGGTGTGTGGCAAGAGTTTCGCAAGAAAAGAGCATTTAGATAATCACACCCGATGCCATACAGGCGAAACACCATACAGGTGCCAATATTGCTCGAAGACATTTACCCGAAAAGAACACATGGTAAATCACGTGCGCAAACACACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACACTTTATGAACCATGTTATGTGGCATACAGGAGAAACCCCCCATCATTGTCAAGCCTGTGGCAAGAAGTATACGCGCAAAGAGCATCTCGCTAACCACATGCGTTCACACACCAATGACACCCCATTCCGCTGTGAGATATGCGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGTGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACTCGAAAGGAGCATCTTCTCAACCACGTTCGCCAGCACACGGGGGAGACGCCCTTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAGGATCATCTGGTGAACCACGTCAGGCAACACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACATAGATGCCACTTCTGCTCGAAATCATTTACTCGTAAGGAGCACTTGACGAATCATGTACGAATCCACACTGGCGAATCTCCGCACAGATGTGAATTCTGTCAGAGAACGTTCACCAGGAAAGAACATCTCAATAATCATCTCCGTCAACATACCGGAGATTCTTCTCATTGTTGTAACGTTTGCTCTAAACCATTTACGAGGAAGGAACATCTCGTAAATCATATGCGCTGTCATACTGGTGAACGTCCATTCGTATGCACGGAATGCGGCAAGAGTTTCCCATTGAAGGGTAACTTGCTCTTCCACATGCGTTCGCATAACAAAGGAAGCAACGCCGAGAGACCATTTCGTTGCGATCTCTGCCCCAAGGACTTCATGTGTAAAGGGCACTTGGTCTCCCACAGACGATCCCATTCGGACGAACGTCCACACAGCTGTCCAGATTGCGGCAAGACGTTCgtcgaaaaaggaaatatgttGAGACATTTACGAAAACATGCATCCGAAGGCCCGCCAACGCAAGTCAGCACGCCTTCTGCTATACCACAATCTGGAGTTTTACCTATACCGACCGCTGCAGTTTTGGTTGGACATCAATTAGCACCACCAGCTCCACCAGTTGTCCCACAACATACCGTAGTTGTACCAACACCACCCGGAGTTCTAGCATCCTATTAA
- Protein Sequence
- MNSEQHALPATTQAQQEIPVSLPGLNLDAHIPTSVSHLQAAHAQMQQQMQAQQQQLHQQQQQQPQQQQQQQQQSHHQMQNHQNAQNSGPTSHNQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQIGVNISGNSSTEGSSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHASEGPPTQVSTPSAIPQSGVLPIPTAAVLVGHQLAPPAPPVVPQHTVVVPTPPGVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899003;
- 90% Identity
- iTF_00899003;
- 80% Identity
- -