Basic Information

Insect: Polistes dorsalis
Gene Symbol: PRDM1
Assembly: GCA_010416905.1
Location: QUOG01000008.1:1632565-1637926[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.1e-05 0.0015 18.6 2.5 1 23 893 915 893 915 0.99

2 5 6.4e-06 0.00045 20.2 5.1 1 23 921 943 921 943 0.98

3 5 1.3e-06 9e-05 22.4 4.2 1 23 949 971 949 971 0.98

4 5 0.00084 0.059 13.6 1.5 1 23 977 999 977 999 0.97

5 5 5.6e-05 0.0039 17.3 0.2 1 22 1005 1026 1005 1026 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.1e-05	0.0015	18.6	2.5	1	23	893	915	893	915	0.99
2	5	6.4e-06	0.00045	20.2	5.1	1	23	921	943	921	943	0.98
3	5	1.3e-06	9e-05	22.4	4.2	1	23	949	971	949	971	0.98
4	5	0.00084	0.059	13.6	1.5	1	23	977	999	977	999	0.97
5	5	5.6e-05	0.0039	17.3	0.2	1	22	1005	1026	1005	1026	0.96

Sequence Information

Coding Sequence: ATGGAGGCCAGTGAATGGGATCACGCGACCTTGAGGGAGGAGGAATTCGAACAACATGCCGTATACCTGGTGCCGGATGTTACGGCATCGCCTAGCGATACCAATCGAGCGGAAGCTTCCTTGCCGAGGAACCTCGTACTCAAGCCCTCTCAAGCCCTCAACGATGTACGTTCATCCACGAAAGAATCCTTTCTCGAGACCTCCTCGatGTTGGGTGTATGGAGTACAAGTTACATCCCAAAGGGCACGCGTTTTGGACCACTGGTGGGCCAGGTTTATACCAAGGATTCGGTGCCCGCTGACGCGAACAGAAAATACTTTTGGAGGGTATACAAGAACAACGAGTTGTTCTACTACATCGATGGTTACGACGTTCAAAAGTCGAATTGGATGCGTTACGTAAACCCAGCGTACTCGTCCGAATCGCAAAATCTAATAGCGTGTCAATATAAGatgaacatttatttttacacgatCAAGCCAATACTTCCGAATCAAGAACTATTAGTGTGGTATTGTAGAGAGTTCGCGGAGCGACTTAATTATCCATTAACGGGTGAATTAATGCTACAAAGAATACGTCAACAAGTACAGCAATCGGCGTTACCAGCGGAAATTTCGGCCAGCGTAGATGTGGTATCACCGTTGAAGGATTCGTCGATTTACGAGAGACGTTCGCAAATGACGCCAACGGACGGTTCCGTGAGGTCTGACGAAGGTTACCACTCGAACGGTTACCACGACGAGATCTTGACCCCGCCTGAGGAGAGCAGCGAGTCCGATTCGGAGAACAACTACGTTCTCGACTTCAGCAAGAACTCAAAGTCCTCCGTGTGCAGCAACGAACCGTTAAAGCCAGACAACGTAGCCGCTAAGAACGAATACAGAAAGGTAAAGATCAAGATAACGAAGACGTACGGTAACTTTCAAGCCGGTACGAAGAGCAATTTGGATGGTACAGCGAAGGAGAAGAATCCAGAGATCGCGACCAGAGCGATGAGCCCGGAGATACAAAAGTCAGTGTCGCCTGTGATGCTTCAAAAAACGACCCTCCTGTCGATGGTAAGCGAGGACGAGACGGACAAAAATTCAAAACCGTTTTATGAACCAGATGTTAAAGGTAACGTACCTGCAACCGCGAGACCAGCCTACATAACGAGTCCTAGCAGTTCCATCCTCGAGAATATTCTTTTACGAAGTACCAcggacaataataataataacaacaacaataataatcatcatcatcatcttcatcatcatcaacaacagcaacagcaacagcagcaacaactgcaacaacaacaacaacaacaacagcaacaacaacagcagcagcagcaacagcaacatcatcatcatcaacatcaccatcatcatcatcaacaacaacaacagcaacagcaacatcaACAGCATCAGCATCAACAACATCAACATCAGCATCATCAACAGAGCCATCATCAAAGTCACACGGCAGATTCGGTGACGCCACCACCCTCGAGCCCTACGGAGATGGCTTACTCTTACAAGAAATCGCATCGTTACGGCAATATCTTACCGTGCAGTCCAGACTCCAGTTCGAATTTGCCGATGCAGACTGAATCCTGCGTAAACTCGACCACTAGTAACCACGGTCCCGTACCAATTCCAAGTCCAACCGGTGGACTTCACTCGAGCACGGGTAATCTTCATTCTAGTACGGGAACGAGCAACGGAAATGCAACGACTCATATTGGGAATGTGCACTCGTCTAGCAGCCCAGGCGTTAACGCGCATTCGAATAGCGGCGTGCTTTCCTCGAGTACGATCTTGACATCGTCCTCAAATGTTGCAAGCTCCTCCTGTCTTCCAAAGCGAAAAACGAAGAGCCCGTCTCCGGCAAATTCTCCACCATTGTGTCCCTCCTCGACACCGACGGTTTTATATTCGACCAATTCCGGAGGTTGTCAAATAGAGTCGAGTTCGGTCTATTCAAATTCGGCTGGTGGTAATAAtgtcggtggtggtggtggtggtagtggtggtggaggtggtggtggtggtggtagtggcgGCGGTAGTAGTGTTGTGAGTGGTGGTTGTGGTAATGGTGTCGTTGGTAGTGTCGGTGCTtgtggtaatggtggtggtgttggtggtaaTAGCAGTGGTGGTGTCGGTAGTGCCGGCAACAATCATCAAAACTCAGTTTCACCGATATCACCGATACAATCACCTTCTTCCTATTCGTACGGTCTTTATCATCAAAACGGAACGCTTCATCATAATGCGACCCCTTTGTCGATCAACTGTACGGTTTATTCTCCAACCCCGAGCACGGGTAGCAATGGCAATCTCGTGTACGGCGAAAGAACGTCGGACGGTAGACGTCTGGATGTTCCGAGCAACAACCATCAACTTCCCACCTCGTCGACGACTATGCAAATCGACGGGAGTCAAGCTGGCCTGATCGCAGGAACGCACAATCTTCACCTCGGCCATCATCCTGGACTCACTATTCACGCAAACTCTTCTTCCTCCGGGGCCCTCAATCACAGATACTCGCCGGCGAGTTCTCTCTCCCCGGACGACCATGGTTGCTCGCAGAGTGGCTCGCTCAGCCCTAACTCTCAGGGATCGAGGGGTTACAGGTCGTTGCCTTATCCGCTTAAGAAGAAGGACGGGAAGATGCACTACGAGTGCAATGTCTGCTGTAAGACCTTCGGACAGTTGTCGAATCTTAAAGTTCATCTCAGAACGCACTCCGGCGAGAGACCGTTCAAGTGCAACGTCTGCACCAAAAGCTTCACGCAACTGGCGCATCTACAAAAACATCACCTCGTGCATACCgGCGAAAAACCTCATCAGTGCGAGATCTGCAAGAAGAGGTTCAGTTCTACCTCGAATTTAAAGACTCATCTCAGATTACACTCCGGCCAAAAGCCCTATGCTTGTGACCTATGTCCCGCGAAATTCACCCAATTCGTTCATTTGAAATTACACAAGAGACTACACACGAACGAGAGGCCTTACACCTGCCAAGGCTGCGACAAAAAGTATATCAGTGCGAGTGGCTTGAGAACTCATTGGAAAACGACCAGTTGCAGGCCGAACAGTATCGAGGATGAACTCGCTTTAGCAGCTGCCGTTGGCTCGCCGACCTATTACGAATATGGTCCTGACATGAATGTTGGAACCATGCCGAAGGAATGCGAATTGGAACACATCGAAAACTATGAAAGGCACGGGTCGACGCACGGGCCGCACACGACGTCTCTTCACAATTTGGAGAACCCAGTGGCGAGACCGAGCGTGATAGAAACCTCCCAGCCACACATAATCGAATGTACCTAA
Protein Sequence: MEASEWDHATLREEEFEQHAVYLVPDVTASPSDTNRAEASLPRNLVLKPSQALNDVRSSTKESFLETSSMLGVWSTSYIPKGTRFGPLVGQVYTKDSVPADANRKYFWRVYKNNELFYYIDGYDVQKSNWMRYVNPAYSSESQNLIACQYKMNIYFYTIKPILPNQELLVWYCREFAERLNYPLTGELMLQRIRQQVQQSALPAEISASVDVVSPLKDSSIYERRSQMTPTDGSVRSDEGYHSNGYHDEILTPPEESSESDSENNYVLDFSKNSKSSVCSNEPLKPDNVAAKNEYRKVKIKITKTYGNFQAGTKSNLDGTAKEKNPEIATRAMSPEIQKSVSPVMLQKTTLLSMVSEDETDKNSKPFYEPDVKGNVPATARPAYITSPSSSILENILLRSTTDNNNNNNNNNNHHHHLHHHQQQQQQQQQQLQQQQQQQQQQQQQQQQQQHHHHQHHHHHHQQQQQQQQHQQHQHQQHQHQHHQQSHHQSHTADSVTPPPSSPTEMAYSYKKSHRYGNILPCSPDSSSNLPMQTESCVNSTTSNHGPVPIPSPTGGLHSSTGNLHSSTGTSNGNATTHIGNVHSSSSPGVNAHSNSGVLSSSTILTSSSNVASSSCLPKRKTKSPSPANSPPLCPSSTPTVLYSTNSGGCQIESSSVYSNSAGGNNVGGGGGGSGGGGGGGGGSGGGSSVVSGGCGNGVVGSVGACGNGGGVGGNSSGGVGSAGNNHQNSVSPISPIQSPSSYSYGLYHQNGTLHHNATPLSINCTVYSPTPSTGSNGNLVYGERTSDGRRLDVPSNNHQLPTSSTTMQIDGSQAGLIAGTHNLHLGHHPGLTIHANSSSSGALNHRYSPASSLSPDDHGCSQSGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNSIEDELALAAAVGSPTYYEYGPDMNVGTMPKECELEHIENYERHGSTHGPHTTSLHNLENPVARPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01234578;
90% Identity: iTF_01513775;
80% Identity: -