Pdor010481.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- prdm10
- Assembly
- GCA_010416905.1
- Location
- QUOG01000005.1:4354881-4358667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.086 6 7.2 3.5 2 23 524 545 523 545 0.95 2 11 0.00048 0.034 14.3 0.2 2 23 558 579 557 579 0.95 3 11 0.0049 0.34 11.1 4.3 1 23 597 619 597 619 0.92 4 11 0.0088 0.62 10.3 2.0 2 23 628 649 627 649 0.96 5 11 0.0012 0.087 13.0 0.1 1 23 656 678 656 678 0.98 6 11 0.0016 0.11 12.7 4.3 1 23 685 707 685 708 0.96 7 11 0.0014 0.096 12.9 4.0 1 23 713 735 713 735 0.98 8 11 4.5e-05 0.0032 17.6 4.0 1 23 741 764 741 764 0.96 9 11 0.0015 0.1 12.8 1.7 1 23 797 820 797 820 0.97 10 11 3.2e-05 0.0023 18.0 2.4 1 23 842 865 842 865 0.97 11 11 0.0033 0.23 11.7 3.4 3 23 903 924 903 924 0.98
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGGCCCTGGTGACACATTTGATATGTCCAACATTGGTAAAGTTGCTGACACTTCGGTAACTTGGCCAATTGATAGCCCAATTAACTCGGCAATGTATGAACAACCAAAgaagatgaataataatagattactATTTTTGACTGTTGAATATGTTCCAGATCAATCTAGAGAttattctcgtttatttcCAACGTACGAGCAGGTCTCGTTCTCCCCCAGACCTTCGTCTCCTCTTTCCGAATTTGAACATCGCGTTAGTCCACTTGATCCTAATATGAGTTCTGCTGCTAGGTATTCACCAACTCCAGTTCAATTACCTCCGTCCCCTTTTCATAATTCTGTTGTTATTCTACAAGGTCCTTCTTCCCCTTTGATATCTACAACTGAATCCAATGTAAGATCAAGTATCAATTTTGTGGGTCAATTGACACATCCAATAGATGCGCAAACTGATACTGGAACAGATTTTATCAATGAAGATAATGAAGAAACTTTAGTTTCTACAGTtggaaatgaattaatattaatgcaaGAGCCTAATGCAGAATTGGAGCACAACACAACTCCGCTCATGTTAACGGGTATACCAGATACAGATTTTGCTTTAACAAGAGATTATGTAGTAATGCAAGATGATCAGGTCAATGTAAtgaattctttgaaaaatcaaaCTTTTACAATGGGAGATAATCATATCAATAATGCATctgaaaagaagaatataacgAAAGAAAGTAATTCTCAGTCAATAACGGAAGCCAATGAGCAAATGGgtcaaattaatgaaatattatctcatgcgaataaaaaaaaatctatcgataagaaaaatactaaGAAGTCTAAGCAACAAATAGACGATGAcaaaaatttttGGTGTGATGAATGTGATGGTATTTGTACCAACGAAGATGGTTGCACTTCTCATAATGTATGTACAATTGCCGATCAACCTGTACCATCACGAGCTATAGCTACACTGCCAGGATCATATCTttctataaacaaattatctaCTGTGGATATTATTTTGGGTGGTTCGGAGTATGGAGTTTTCGCAAAACGCAATATTCGTAGGCGAACACAATTTGGTCCTATCGAAGGTATTTTATATGGTTATGATGGAACACCGTTTGAAAATGCATTACCACTGCTTTATGAAGCAGAAGAAGGACAATTTTTGAAGGTTGATGTTTCAGACGAAAATACTTCAAACTGGATGCGTTTTGTGAGACCTGCACTTACGTacaaagaacaaaatttagtGATTTGCCAACAGAAGGGTGGAATCGTATTTTTaactacaaaaaatattttaccaaaAGAAGAGCTAAGAGCAGGACCTCATCCTGATTATGCAGCACGTAGAAATTTAATGGTATTGAAACCTGATGTGAAAGATGACAAAgaatataacaACAGCGCGAGTATTTGGCCAAGATCGGATAACAATTCTTATAATCATGCGAGACGTATGAAATTGTACAGAGGcagaaatttaaaagaaaaagaaaatgctagacaaaataattgtaaagaaTTGAAATGTTGTACGTGTAATTTAATCTTCAAAAAGTTAtctctatttaaaatacataatctCATGCACAATCCGGAAGACAATAAGATAAATTGTCAATCGACGGTTTGTCCACAGTGTGGATTagaatttcaaaaaaagtCCGAATTAATCAGTCATGTTTCGCAACATGCTAGATTATCTTTGccaaaaagtaacaaattgaCATCAGTAGTTGCTGCATATAAGTGCTCGATGTGTTATAAACGCTTTGCTACAAAAGTACGACTACAGAAACATTGTTTGGTGCATGGTGCCGAGGACCAAAAGCCACTGCCGTGCAACATTTGTCTGAAAAGATTCATGAATAATTCTGCTTTATCTTGTCACTTAAAAACACATAGagaaaataagcAAGTGTATGAATGTCCAATATGCAGACAATTTTTTGATCAAGGCGTGATGTTAAAAGATCACGTTGAGACGCATAGAAATGGAGATCATACATTTACCTGTCCTCATTgtcaaagaaattttattaaatattcggTAATTCGAAAACACATAAGAGCTCATCATTGTGAAAGAAAACACAAGTGTCAGTTTTGTACAAAGCGTTTTCCTACAGTGGATAAATTACGAATGCATTTACTCAAACATTCTGATCACAGAGAATTTCACTGTGCTAATTGTGGAAgacaatttaaaagaaaagataaacttAAGGAACACATGACTAGAATGCACAATTCGCAGAAAACGAATCAAGAACAAACAGTACAAAACaatcaagtaaaaaaatttgtgCCAAAGgtaAATCCAAATGATTACAATCGTTTCATATATAAATGCCATCAATGTTTAGTAGGATTTAAGCGAAGAGGAATGCTCGTTAATCATTTGGCAAAACGACATCCAGACGTTGCTCCAGAATCCGTGCCCGAATTAAATTTACCAATTTTGCGACAAACGAGAGATTATTATTGTCAATATTGCGATAAGGTATATAAAAGCAGCAGCAAACGTAAAGCTcatattatgaaaaatcatcCGGGTGCTGCTCTACCACCGAGTAATCGTCAGAAAGAATCAGAATATTCGAGTCTGCCTAATCCAACTTTCAGTCAGACGGTTGGTAGTATTACAACTACGCCTCAAGGATGTCAATGGTGTCATAAACAATATGCCAGTAAGGCAAAACTTTTGCAACATCAACGTAAGAAACATCCGAATTTAATGGAACCGGCCGATCAAATTCCGCGGTCGAGAAGTCGTCCACCGCAAAATCAAAACCAACCACCTACGTTAagcgataataattttatgttatCGGATTATATTCAAGCGTGCGACGTAGATGgagaattttttaaacaaagaataattaaaatatcaaacgaaGTTGATCTAATAAGTAACGGCTTGGAGTTGGTTGGGCAACAATTTGTACGTATGCGTGATATACGTTGA
- Protein Sequence
- MDPRGPPEGGPGDTFDMSNIGKVADTSVTWPIDSPINSAMYEQPKKMNNNRLLFLTVEYVPDQSRDYSRLFPTYEQVSFSPRPSSPLSEFEHRVSPLDPNMSSAARYSPTPVQLPPSPFHNSVVILQGPSSPLISTTESNVRSSINFVGQLTHPIDAQTDTGTDFINEDNEETLVSTVGNELILMQEPNAELEHNTTPLMLTGIPDTDFALTRDYVVMQDDQVNVMNSLKNQTFTMGDNHINNASEKKNITKESNSQSITEANEQMGQINEILSHANKKKSIDKKNTKKSKQQIDDDKNFWCDECDGICTNEDGCTSHNVCTIADQPVPSRAIATLPGSYLSINKLSTVDIILGGSEYGVFAKRNIRRRTQFGPIEGILYGYDGTPFENALPLLYEAEEGQFLKVDVSDENTSNWMRFVRPALTYKEQNLVICQQKGGIVFLTTKNILPKEELRAGPHPDYAARRNLMVLKPDVKDDKEYNNSASIWPRSDNNSYNHARRMKLYRGRNLKEKENARQNNCKELKCCTCNLIFKKLSLFKIHNLMHNPEDNKINCQSTVCPQCGLEFQKKSELISHVSQHARLSLPKSNKLTSVVAAYKCSMCYKRFATKVRLQKHCLVHGAEDQKPLPCNICLKRFMNNSALSCHLKTHRENKQVYECPICRQFFDQGVMLKDHVETHRNGDHTFTCPHCQRNFIKYSVIRKHIRAHHCERKHKCQFCTKRFPTVDKLRMHLLKHSDHREFHCANCGRQFKRKDKLKEHMTRMHNSQKTNQEQTVQNNQVKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQKESEYSSLPNPTFSQTVGSITTTPQGCQWCHKQYASKAKLLQHQRKKHPNLMEPADQIPRSRSRPPQNQNQPPTLSDNNFMLSDYIQACDVDGEFFKQRIIKISNEVDLISNGLELVGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01512400;
- 90% Identity
- iTF_01090224;
- 80% Identity
- -