Basic Information

Insect: Polistes dorsalis
Gene Symbol: -
Assembly: GCA_010416905.1
Location: QUOG01000004.1:2955947-2958051[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.4 3.1e+02 1.9 0.1 5 17 176 188 174 189 0.87

2 9 2.1e-05 0.0015 18.6 1.6 2 23 232 253 231 253 0.97

3 9 4.5 3.2e+02 1.8 0.1 1 23 259 282 259 282 0.90

4 9 0.00056 0.039 14.1 4.4 1 23 388 410 388 410 0.98

5 9 1.5e-05 0.001 19.1 0.1 1 23 416 438 416 438 0.98

6 9 3e-06 0.00021 21.3 2.5 1 20 444 463 444 466 0.93

7 9 1.3e-05 0.00088 19.3 4.0 1 23 472 494 472 494 0.98

8 9 7.4e-05 0.0052 16.9 3.2 1 23 500 522 500 522 0.99

9 9 3e-06 0.00021 21.3 0.8 1 23 528 550 528 550 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.4	3.1e+02	1.9	0.1	5	17	176	188	174	189	0.87
2	9	2.1e-05	0.0015	18.6	1.6	2	23	232	253	231	253	0.97
3	9	4.5	3.2e+02	1.8	0.1	1	23	259	282	259	282	0.90
4	9	0.00056	0.039	14.1	4.4	1	23	388	410	388	410	0.98
5	9	1.5e-05	0.001	19.1	0.1	1	23	416	438	416	438	0.98
6	9	3e-06	0.00021	21.3	2.5	1	20	444	463	444	466	0.93
7	9	1.3e-05	0.00088	19.3	4.0	1	23	472	494	472	494	0.98
8	9	7.4e-05	0.0052	16.9	3.2	1	23	500	522	500	522	0.99
9	9	3e-06	0.00021	21.3	0.8	1	23	528	550	528	550	0.95

Sequence Information

Coding Sequence: ATGAGAATGACAGGTTCATTTTGTGTTCTTTGTAGTACAAATATTGATGCATCTTCTtgcgtaaatatttttacgccTCTTCTATACGATAATGAGTTACtagtaaattttataatacgcGAATTCAAACATATGTCATCTAATCTACATAGTCCGTACATCTGTTTTcgttgttataaattatttcaaatgttagAACGAGCACAATGGATCATTAATAATGTTCGTtgtgaaattttaaaatctcAGCAACGTATATTACCGAAGAATACAGATTATCTTGTAGATAATACTccaatttttgaagttattcaaACTAAACGGGATTTGGATCAGACAACAAATGGACCAAAACATATCACAGATCTAagttatttgaattatttgaatattaatccAAACCTTATGGCTTCtcataacattaaaaatattgaactaATTGATTCgagagatatttttaaagaagaaacagaTATTGATAATAAAGTTTCAGAAAGcgtatacaatattattaaaaataatagctATTGTAATATAGATTTTAAGAATAatgataatgtaaataaagatacgaagattgaaatatataataaaaaacgagaTTTGATTATGcaaattttagaaaatgattttcgcAAATATGTGTTAAATGATATAGAACGAGATATCACAGAACaagaaatttctaataaacagTGTAAGTTCTGTACTGAATCATTTAAGACTAATGAGGAATTAAatgtacatttattaaaacataatgatatacaattatatcaGTGTTCTGCATGCAAGGAAATACTTATAAATTTTTCACTTGCAAGTATGCATGTATTAAAAGCACACAGTGAAAATCAAGATTACGTTAATATTTTGCcaatttcgtataaaaatgaaatagaaccTTCTCTTAATgatgtctctctttttccacaAAATAATATGGGAacattaaatgatttaaagtCAAATACTTTTGAACATACGgagatcgataaaaatatatctgaaataaaagataatacagTGTCTACTACAGaaaataaagaagttgCAGAAAGCAATGCTATTAACTCCATAGATGAAAAGAGCAAAGTAAATTCAAATTCTGTTTCTTGGAAATCGAgaggaatattaaattacagtTTAAAACCATTTAAACATACATGCTCTAAGTGTAATAAAAAGTGGAAAACATCTACGGAATTAAAGATACATATGAAATCTCATTCAAATATAAGACCATATATGTGTGAAATATGTGGTCAGGCTTACAAATATAAACAAgctttaaatatacatattgatATGCATAATGGAATAAGCCCATTTCAATGTTCTTATTGTAACAAATGTTTTACACAAAAAGGTGCATTAGTGAGACATCTACCAATGCATACAGGAGAAACACCATATCAATGTGAATTATGTGGCAAAAGATTTATACATCATTCATCATACAACATGCATATATTGTCTCATACTGGAAAAAAATCTTATCAATGTCATATATGCGATGCATCATTGCTTTCTACATCACATTTAAAAAGACACATGCGAGTACATACAGGTGAAAAACCATATAGCTGCATCGTATGTGGGAAACGTTTCGCGCAACGATACAATTTACAATCTCATCAAAAAATACATAGCATATCAGAAACAACGACAAATGATACTGAAGATTTACTAAACTTgtGTAATCAGTGTAACTCATTATGTCAGGAAGGACACAAATGTAATGAGCAAACAAAAAACCAATGCAAttcagataaaaatattacaactaTGGAAAAAGTAACTAATTATAATTGCAGTCTATAA
Protein Sequence: MRMTGSFCVLCSTNIDASSCVNIFTPLLYDNELLVNFIIREFKHMSSNLHSPYICFRCYKLFQMLERAQWIINNVRCEILKSQQRILPKNTDYLVDNTPIFEVIQTKRDLDQTTNGPKHITDLSYLNYLNINPNLMASHNIKNIELIDSRDIFKEETDIDNKVSESVYNIIKNNSYCNIDFKNNDNVNKDTKIEIYNKKRDLIMQILENDFRKYVLNDIERDITEQEISNKQCKFCTESFKTNEELNVHLLKHNDIQLYQCSACKEILINFSLASMHVLKAHSENQDYVNILPISYKNEIEPSLNDVSLFPQNNMGTLNDLKSNTFEHTEIDKNISEIKDNTVSTTENKEVAESNAINSIDEKSKVNSNSVSWKSRGILNYSLKPFKHTCSKCNKKWKTSTELKIHMKSHSNIRPYMCEICGQAYKYKQALNIHIDMHNGISPFQCSYCNKCFTQKGALVRHLPMHTGETPYQCELCGKRFIHHSSYNMHILSHTGKKSYQCHICDASLLSTSHLKRHMRVHTGEKPYSCIVCGKRFAQRYNLQSHQKIHSISETTTNDTEDLLNLCNQCNSLCQEGHKCNEQTKNQCNSDKNITTMEKVTNYNCSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01233176;
90% Identity: iTF_01232589;
80% Identity: -