Pdor004613.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000002.1:3388348-3389875[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.3e-05 0.00092 19.2 5.2 1 23 164 186 164 186 0.98 2 9 3.4e-05 0.0024 17.9 1.7 1 23 192 214 192 214 0.98 3 9 0.03 2.1 8.7 2.0 1 23 221 244 221 244 0.94 4 9 4.6e-07 3.2e-05 23.8 1.3 1 23 250 272 250 272 0.98 5 9 0.37 26 5.3 3.9 2 20 278 296 277 300 0.82 6 9 7e-05 0.0049 17.0 1.9 1 23 307 329 307 329 0.95 7 9 4.4e-07 3.1e-05 23.9 1.2 1 23 333 355 333 355 0.99 8 9 0.028 1.9 8.8 1.3 1 23 361 383 361 383 0.92 9 9 1.9e-06 0.00014 21.9 0.6 1 23 389 411 389 411 0.99
Sequence Information
- Coding Sequence
- ATGACCAATAACAACGATCCTTTATACATCCAACCACGTGTAACGATGACGGTGGGTAATGAGCCATTCTACATAGCATCTACTCAGAATGGAGCACAGAATATCAGTGATGTTAATACAGTAGAACTTCCTAATACATCGTCAAGTAATATTGCAGCTCAATCCGAAAGGTGTAACTCACTCAACTCACTCGGTCCATCTTTTCTCACAGTGAAATTGGGAGATGACTACTTTCGCATCCCAAAATCTTTAAGCGTTTTTATGATGAAGGAACCAAACCCAAACGAAAATGATtctgtaaagaaaaatgtagtgaaagaaaagaacaatgaTAGTTCTATACAAACGAGAAGTAAACAAAAacgtattaaagaaaatattgatattacgGATGATTTGGACGATACTCCTCTtgattttagaaaaatgtgcgaagaaaagaatttaaaaacaaagtcTGATAGATTGgctagattaaaaaaaaagccaTACTCCTGTGAGATTTGTCACTTTACTTTCGATCGCAAGAGTAAACTCACCAGTCATATGTTCAAACATAGTAATTCGAGGCCTCATAAGTGCCGAATTTGTTCGAAAGGATTTAAAACTGGTGCTTATTTATCAAGACATATGGAAATACATGACGAACCGGCACAATTACATGCATGCACATTGTGTGATTTCAAAGCGAGAACAAAGCCATAtcttaaaattcattatattcGTAAACACACGGAGGATTACAATTACAGTTGCGAACAATGtggaaaaatgtttaaagttCAATCAGACTATACTACACATATGAAGGATCATGATACTGAATCTTGCGTTTGTGATATCTGTGGATCTTCATATCCAAGCAAAAGCTCTCTCTACTTTCATAAACATTACAAACATAAGACCAAAATCAAGGAATTCGAGTGTTCGACTtgtagaaagaaatttaaaagtcAAAAGAATCTTGATAATCATGCAGAGTTACATAAGATGAAATATGTTTGTGAACAATGCGGAAtggaatttaaatttaagtatGGCCTAACGAAACACTTGAGAACACATTCTGGTGAAAAATCTTATCTCTGTGCGATTTGTGGGAAAACATTTGGTTGTTTGAGTTCCCAAAAAATACATCTGCTCAAACACGTTGGCGAACGTCCCTACGTTTGTGATATTTGTGGTCAAAGTTTCACACAGAGATCTCCAATGATGTTGCATAGAAGAAAACATCCTGGTGTgcatccaccaccacctccaatCAAAATCACTAATCTATTGCACGGTGTACAAGACAAGATCATCATAAACACGAATGTAAAATAA
- Protein Sequence
- MTNNNDPLYIQPRVTMTVGNEPFYIASTQNGAQNISDVNTVELPNTSSSNIAAQSERCNSLNSLGPSFLTVKLGDDYFRIPKSLSVFMMKEPNPNENDSVKKNVVKEKNNDSSIQTRSKQKRIKENIDITDDLDDTPLDFRKMCEEKNLKTKSDRLARLKKKPYSCEICHFTFDRKSKLTSHMFKHSNSRPHKCRICSKGFKTGAYLSRHMEIHDEPAQLHACTLCDFKARTKPYLKIHYIRKHTEDYNYSCEQCGKMFKVQSDYTTHMKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKIKEFECSTCRKKFKSQKNLDNHAELHKMKYVCEQCGMEFKFKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLKHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIINTNVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00718852;
- 90% Identity
- iTF_01234543;
- 80% Identity
- -