Basic Information

Insect: Polistes dorsalis
Gene Symbol: -
Assembly: GCA_010416905.1
Location: QUOG01000001.1:10461305-10464086[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.19 13 6.2 4.6 1 23 387 409 387 409 0.97

2 9 6.2e-05 0.0044 17.1 3.1 1 20 415 434 415 437 0.96

3 9 6.7e-07 4.7e-05 23.3 0.8 1 23 443 465 443 465 0.98

4 9 0.00018 0.013 15.7 4.3 1 23 471 493 471 493 0.98

5 9 3.5e-06 0.00024 21.1 0.6 1 23 504 526 504 526 0.98

6 9 7.6e-09 5.3e-07 29.4 1.1 1 23 532 554 532 554 0.99

7 9 3.4e-06 0.00024 21.1 0.5 1 23 560 582 560 582 0.97

8 9 0.0001 0.0073 16.4 0.2 1 20 588 607 588 610 0.94

9 9 6.3e-05 0.0044 17.1 0.2 3 23 618 638 616 638 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.19	13	6.2	4.6	1	23	387	409	387	409	0.97
2	9	6.2e-05	0.0044	17.1	3.1	1	20	415	434	415	437	0.96
3	9	6.7e-07	4.7e-05	23.3	0.8	1	23	443	465	443	465	0.98
4	9	0.00018	0.013	15.7	4.3	1	23	471	493	471	493	0.98
5	9	3.5e-06	0.00024	21.1	0.6	1	23	504	526	504	526	0.98
6	9	7.6e-09	5.3e-07	29.4	1.1	1	23	532	554	532	554	0.99
7	9	3.4e-06	0.00024	21.1	0.5	1	23	560	582	560	582	0.97
8	9	0.0001	0.0073	16.4	0.2	1	20	588	607	588	610	0.94
9	9	6.3e-05	0.0044	17.1	0.2	3	23	618	638	616	638	0.98

Sequence Information

Coding Sequence: ATGGACTGGGAAGTTTCTTACAGGAATATGTGTCGTGCTTGTATGAATATTGGTTGTGTACTCTTACCAATATATGGTGACGATGCGACTGGTATCAAGAATTTGACTGAAAAATTTCAGGAAGTTACCTTAATTCGAGTTGATAAGAACGATGGATTACCACAGATGCTTTGCGCTAAATGTGCTTATCGGACAATTACATTGTATAATTTTAGATTACAAGTACAAAAGACGGAAGAAAAATTGAGGAAGATGTGTGCTATGCAATTGGAAGATGTAAAAgAAGAAGTGGAAAAAATGgtagaaaatgtaaatgaacAAGACTGCATAATTTTAGAAGATGAATTAATGCAAAAAAAGGTTTTCTTTGATACTTCTAAAATGATTTCTGATAATTATGCGAGCTCTATTAACGAAGAATTAAGAAAGGATGTTACAGAAAAGAAGAGTAAAGACGAACAATCCTTAGAAATAATACCGTTAATGGATTTTAATCGTAGCAATGAAATAGATAAGATTCAAGATCATTTAGATAATATCATAGATGACTCTCAGcctgataaattatataatattaaaagcgACTTAGATGACCAATTCTGTAATACTTCCAATTCACAAGATTTACATTATACAGTAGTATATGTAGGAGACACAGAAATGGAGTCTATTAAATCAGAGAATCATGATCATCTTTGCAAATCAAAGgatgaaaatattgatattaaaacattattttttaaggaTAATTTTGAACAATCTAAGACAAATGACAAATTTTTAGATGCAATATACATATCTGATAATATGGAatcaaaagatattaaaacattaaacaTTGAAACCGAAGCTTGGCAAATGATATCAACGGATGAATCTGTAGAACAGGTTGATAAAATGAATCTTAACGTCCAACGTGATTGTGAAACAATGGAGAACATGGAGTCAAAAGAAAGCAATGATTCTGACTCAGATTATTTCATTGATCCTAAGGATAATATTTTAGGAAGTTTAAATGATATGATAACTAgaatcaaagaaataaaaactgagaataatacaatagaatatCAGTGTACTTTGTGTTTGCAGAACTATGATAAACTTCCCGGTGTTTTACTTCATACTATTGATAATCATGTTCCAAGTAGTGGTCCATTTTTTTGTGTCGTTTGTGAGATGGATTGTAATAGTCATAAAGAGTTAAGGACTCACGTTAAAAAACATACTGGACGATTTccatatatttgttttatttgtgatAAAGCGTATACTTCGAAAAGGTATTTAAAGCGACACATGGTTTGTCATACAGATTTTCCAAGACATCGTTGTCCAAAATGTGGTGTAAGATTTAAAACTAAAGTAGAATTAGAAAATCACATTGCAACGCATGTACATGGGGCACCATATTCGTGTAGTCAATGTTCACGCTTATTCAATCACAAAGGTAATTACAAAAGGCATTTAATTACACATTTGGATCCACAAGGTCTTCATTTACCAAAATATCCATGCACGGTTTGCGGGAAGCGGTTCTTGAATAATCGTACTCTTGAAACTCATATGCGAGTTCATACAGGAGAAAAACCGTTTAAATgcaatatatgtaataaaagtttttcaCAACaaggaaatttattaaatcatttaagaATTCATTCGAATCCTCGAAGTTATACATGCGAAGTTTGCGGAAAAAGATTTAACCAGAGAGCTACGTTGAAAGATCATAGTCTTATACATACGGGAGAAAAACCTCACATTTGCAATGTCTGCGGAGTAGCGTTTACATTCAGTGCAGCATTAAGACGTCACATGTGGAATCATGGTAGTAAGAAACCTTTCGGTTGTGAAATTTGTCCTTCACGTTTTGTAGGGAAATATGATTTAAGACGTCACATGCAAATTCATAACGACAGACCAAGaacgaaacaaaagaaaaatgaagggaaaaataataatacagaaGAAGTatcgagagaaaatattactGAAGAGGTAAACACAGAAACTGTTCTCATAGAGCAAGTTCTTTTAAATCAAGATGTTACGCAAGTTATACCTcaagaagaagcagaaaaagaaaatgtagatGCCCTTTTCAATCTTATGCactatgattaa
Protein Sequence: MDWEVSYRNMCRACMNIGCVLLPIYGDDATGIKNLTEKFQEVTLIRVDKNDGLPQMLCAKCAYRTITLYNFRLQVQKTEEKLRKMCAMQLEDVKEEVEKMVENVNEQDCIILEDELMQKKVFFDTSKMISDNYASSINEELRKDVTEKKSKDEQSLEIIPLMDFNRSNEIDKIQDHLDNIIDDSQPDKLYNIKSDLDDQFCNTSNSQDLHYTVVYVGDTEMESIKSENHDHLCKSKDENIDIKTLFFKDNFEQSKTNDKFLDAIYISDNMESKDIKTLNIETEAWQMISTDESVEQVDKMNLNVQRDCETMENMESKESNDSDSDYFIDPKDNILGSLNDMITRIKEIKTENNTIEYQCTLCLQNYDKLPGVLLHTIDNHVPSSGPFFCVVCEMDCNSHKELRTHVKKHTGRFPYICFICDKAYTSKRYLKRHMVCHTDFPRHRCPKCGVRFKTKVELENHIATHVHGAPYSCSQCSRLFNHKGNYKRHLITHLDPQGLHLPKYPCTVCGKRFLNNRTLETHMRVHTGEKPFKCNICNKSFSQQGNLLNHLRIHSNPRSYTCEVCGKRFNQRATLKDHSLIHTGEKPHICNVCGVAFTFSAALRRHMWNHGSKKPFGCEICPSRFVGKYDLRRHMQIHNDRPRTKQKKNEGKNNNTEEVSRENITEEVNTETVLIEQVLLNQDVTQVIPQEEAEKENVDALFNLMHYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01233155;
90% Identity: iTF_01235194;
80% Identity: -