Pdor006527.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000021.1:3109271-3112084[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00021 0.015 15.5 1.6 2 20 147 165 146 168 0.94 2 13 0.0002 0.014 15.5 1.8 1 23 174 197 174 197 0.93 3 13 3.1e-06 0.00022 21.2 0.9 1 23 203 225 203 225 0.98 4 13 6e-05 0.0042 17.2 2.1 1 23 379 401 379 401 0.97 5 13 6.2e-05 0.0043 17.1 0.3 2 21 410 429 409 430 0.93 6 13 0.00029 0.02 15.0 2.6 1 20 452 471 452 474 0.92 7 13 0.0041 0.29 11.4 3.3 1 23 479 502 479 502 0.95 8 13 1.2e-06 8.5e-05 22.5 0.3 1 23 508 530 508 530 0.98 9 13 0.0019 0.13 12.5 4.6 1 23 537 559 537 559 0.98 10 13 0.00034 0.024 14.8 0.4 3 23 567 587 565 587 0.97 11 13 0.00039 0.027 14.6 0.2 1 23 593 616 593 616 0.96 12 13 0.47 33 4.9 0.1 1 23 630 652 630 652 0.93 13 13 0.002 0.14 12.4 0.0 2 23 915 936 914 936 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCATGATAATGAACAATATGTTACCTTTCCACTATCTGGAGTGCATGATaatattcaagaaaatataatatcgcaTGAAGAGATATGTGAACCTGTTGATGATTGCGTACTGCAAGATGGTTTAACAGAAGTTCCTGTTAATGATGTTAATACTGATATACAAGAAGGACATGTTGCTGTTGAAATCTTACCTGAGAGATCAGACGAAGAGGATGAAAACCGTAGCGTTTATCCAATATATATCAAACAGGAGGAACAGCAACAATATACTTCTGGCGATGATGAATCAATGGCTGTGGAAGCGCTTCGTCAATTGGGTGGGATGTATCCATATTTTGAAAACAAGAAAGTCACTTGTCCCAATTGCGCCAATCTGTTTATGCAAAGTGAATTTGCTAAACATCAGCCTACGTGTAATGTCAGTAAATTATCATGTACAACTTGTGGAGAaacatttgaaagaaaaatggatttaaataatcatatgGTTTGTCATCAAGTAGATCGACCTCATGCATGTAGAACATGTGGTAATTTGTTTCGTTCCAAAAGCAATCTTCAATCGCATATGTTACAAGTTCATCAAATTGAAAGACCGCATAAATGTACTATTTGTGGTGCTGATTTTCAAAGACCTTCTAGCTTATCTAATCATATGAAAATACATACTTATGTAGCTGGCCGTGCTATAATGCAATCAAGAGATAACAATGTACAACAATCAGTGGAGACAGTTAGAAAGTGGTCGGAAAATAATACATCTGAATCACAAACTGTCCCTGTACCATCTTCTACCGTTCAAATtgttcaaaattataatacctGTCAAGTTCATTGGAGTGTTCCTTCATTTACTTTTCAAAATGAACAATCCACTGTTGGTACAATTTCTAATCATGATGAAAAAATAGATACATTGCACGAGTTTAATGTATTACCTAATGGTGAAGTAACACAATTCGAATATACTCAgccgaataatataaataatcaaatcaaTCAGCAATATAGTTTACCTCTCAATGCATTCAACAATTCGGACGGTATGATCAAAGTTGAGGCACttacatataataatgaaagtagAAGAAATTATGCAGATATGGGAACAGATGTTAACAAACAACACACGTGTAGTCATTGCGGTATTAGTTTTTCAAAAGCAATGGCATTGACATCTCATGAAAAAGTTCATGCATCTAAAAACTGGATGCCTATTGAATGTGAATATTGCGATAAACAATTTCAAGATGCAAGTCATCTGGCAACTCATCAAACTACTTGCACCAAAAAAATTatgcaaaataatatagatCAGGGTGTATCAAATAGCAAATGGGGGAAACACGCTTGCTCGGAATGTGGGAAGAAATTTACAACCAAGCAGAAAATGTTTAGACATCAATGGATACATAGGAAGAAAACTCATTGTTGCGAAGTTTGCGGAACGCagtttgaaaaacaaaatcaattaGATAAGCATAGATTATCTGCTCATCCTGGTGACTCGCCATTCACTTGTACAGAATGTGGAAAAAGTTTTGTATCGCGTCAAGGTCTTTGGGAGCATGGTAGAACTCATGCAGGAAGTCCAGCATATTTCCATTGCAATACCTGTTCAAAAACTTTCTCCTCTCGTCAAGGATATTTAATTCATAATCGTACTCATACTGGTGAAAGACCATATGGTTGTAAATTTTGTTGGAAAGCATTTAGAGATGGCGGTACATTAAGAAAACACGAACGAATTCACACAGGAGAAAGGCCACATGTATGTCCATTATGTTCAAGAGCTTTTAATCAGAAAGTAGTTCTTCGTGAACATGTTAGATGGGTTCATGCTGcaggaaaaaatgaaaccGAAGTTACAGGACCGCCTTATCCATGTCCTTTGTGCGGTGCTTTGAATCAAGATCGTGATGAATTGTGTGCGCACATTGTTAAACATTCTGATCAAATGATAGCTGAAGCTAAAgctaaaacaaataataatgctCCTAAATCACGACCTACGAGGAAAAAATCTAAAGCATCCTTAGGAGAAGGTGTACAAGAGAAACAGAATATAGATGATCATGAAATTTCAAGattagaacaaaataaagCTTTGTTGTCTATTACAGAAGCAATGGATAAACCAGATTGTCaacaaattgtaaataataaacaaaataatacttatcTCGTAGTTACTGCAGAAAGGCATAGTGAAAATTTAATTGCGATATCTGAACTTAAACATGATAATGTAAGATTAATATTAGAcaacaaacaaaatgaaaatgttcatATTACACAAAACGATCAAGAACCTACtgattcttatttaattactatggaaaaacaaaatgacacTGCGCATATTTTACAAGATAATGATGCTCTTCATACTATAACTACGAATAGAAATGATGAAGTTGATACAATGCATTTAATACAATCCTCCAAACAAAGTAATGCCctacatttattatcaaagCCGAATGAATCACTTCCTGTTTTGACAATAACTAATAATCCTGAAGATCACGAAAATTATTCTAGTCAAATTGCGCAGATGGGTAATACTAATCTACCAATGGATATGGCTACGCATGATATATCTAGACAAGATCAGACATTAAAAAGTCATAATTGCAATAGACAGGAATCATTATTACACGAAGGAGTTTCTCAAGGAACAGTTAtagaaattgttaattatcaACAAGATAGCGATGATGGAGAAGAATTAGTTTGTGGTATATGTGGGGAAGATTTtactgataaaaatatattaatggaACACGTTAAAACTCATatgtaa
- Protein Sequence
- MEAHDNEQYVTFPLSGVHDNIQENIISHEEICEPVDDCVLQDGLTEVPVNDVNTDIQEGHVAVEILPERSDEEDENRSVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPYFENKKVTCPNCANLFMQSEFAKHQPTCNVSKLSCTTCGETFERKMDLNNHMVCHQVDRPHACRTCGNLFRSKSNLQSHMLQVHQIERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSRDNNVQQSVETVRKWSENNTSESQTVPVPSSTVQIVQNYNTCQVHWSVPSFTFQNEQSTVGTISNHDEKIDTLHEFNVLPNGEVTQFEYTQPNNINNQINQQYSLPLNAFNNSDGMIKVEALTYNNESRRNYADMGTDVNKQHTCSHCGISFSKAMALTSHEKVHASKNWMPIECEYCDKQFQDASHLATHQTTCTKKIMQNNIDQGVSNSKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHCCEVCGTQFEKQNQLDKHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAYFHCNTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKSRPTRKKSKASLGEGVQEKQNIDDHEISRLEQNKALLSITEAMDKPDCQQIVNNKQNNTYLVVTAERHSENLIAISELKHDNVRLILDNKQNENVHITQNDQEPTDSYLITMEKQNDTAHILQDNDALHTITTNRNDEVDTMHLIQSSKQSNALHLLSKPNESLPVLTITNNPEDHENYSSQIAQMGNTNLPMDMATHDISRQDQTLKSHNCNRQESLLHEGVSQGTVIEIVNYQQDSDDGEELVCGICGEDFTDKNILMEHVKTHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01512329;
- 90% Identity
- iTF_01513627;
- 80% Identity
- -