Pdor006269.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000029.1:1173724-1176106[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00023 0.016 15.3 3.9 1 23 230 252 230 252 0.98 2 11 0.36 25 5.3 11.7 2 23 259 280 258 280 0.91 3 11 5.3e-05 0.0037 17.3 6.6 1 23 286 308 286 308 0.99 4 11 0.00037 0.026 14.7 1.6 1 23 314 336 314 336 0.95 5 11 1.1e-06 8e-05 22.6 1.9 1 23 342 364 342 364 0.97 6 11 1.3e-05 0.00091 19.3 0.1 1 23 370 392 370 392 0.97 7 11 7e-05 0.0049 17.0 1.6 1 23 397 419 397 419 0.97 8 11 4.2e-05 0.003 17.7 0.0 1 23 425 447 425 447 0.96 9 11 2.3e-05 0.0016 18.5 0.2 2 23 459 480 458 480 0.96 10 11 1.4e-06 0.0001 22.3 2.0 1 23 546 568 546 568 0.97 11 11 2.3e-05 0.0016 18.5 4.6 1 23 578 600 578 600 0.97
Sequence Information
- Coding Sequence
- ATGTGTACAACCCCTGGCAACGCAGGCGCTGGATTCGGGTATGCCTGGTCCTTTGGAGGACCTGGTACTGAAACCCGAGAGAACGCACAGAGCGAACTTGCTACCAATATTAGTTACGCTGTTAATAACAATCAGGATCAAGGTTCCAGTCAGAAAATTCAAGTCGATATCAAACCTGCTAAAAACCTTAATAGTTCTCATCGTAGACCTATGTTCGCTATGAATGAAAGTTGCCAACAAACTTCTACTACTCATCACGGTCATACGGGTGGAGCTCATAATCAAACGCATGGTTCCCACGTTCGCACTAAAAAGCATCACGACGTTTTCCCATTGAATTGTGAAAAGGGTGGTTGCCAGTGCGACGCTTCTCAACCTACCCCACCACCCTCTCTATTTTCAAATACATTAGTATTTACTACAGGCGACAAGCATGGTATGAGTAAGCATTTCATGACACCGCTTGGACCTCTGCAACTTACTGCGGAAGAGtgcaatgaaattttaatgaaaaggGCAGCAGCCGCTTCTAATCAAGCGAACGCCAATAACGTTGCTACCAGTCAAACTGATGGTACAGCTCATTTTGGGCACGTTTTGACGCACGTAAACACGACTCAAATTGAGACTAAAgtaaaacaacaacaagacATGGGCAGCCAAGTTCGTGTACCTAAAGAAAGACCATATTCTTGTTCTGAATGTGGTAAATCATTTTTGCTAAAGCATCATTTAACGACGCACGCGAGAGTACATACCGGAGAAAGGCCTCACATCTGCATTCACTGTGGCAAAAGTTTTGCTCACAAACATTGCCTTCATACTCACCTGCTCTTACACAGTTCAGAAAGACCTTATCAATGTCGAGAATGTAAAAAGTCCTTTACGTTAAAGCATCATCTCGTAACGCATACTCGGGTACACACGAGAGAAAGACCATTTGTTTGCCAGGAATGTGGAAGAGCGTTTCCTCTTAAACGCCACTTAGTCACCCATAGTAAATTCCATTCTGGAGAAAGGCCATTTGTCTGTGAAGAATGTGGAGAGTCCTTCTCACAGAAGGATCATTTGACGATGCATTCGCGATTTCATGGCAGTTTACATCCATTTGTTTGTCCTGATTGTGGGGCTACATTTCAAAGGAAGTTTGAACTAGTTAACCATGGTCGGTTACATGGTAGAATTCCACACTCGTGTACTGTTTGTGGGAAAGAATTTTTACAGAAGAGAACGCTACTAGCTCATATGCGTTTACATACAGGAGAGACACCTTTTGCTTGCACCGTTTGCGGAGAGGCATTCCCAAGAAAAGTAGATTTAGTTACGCACTCCAAGATTCACAATAACAATACGAGTACAGATGAAAAGTCTCTAACATGCAGgGAGTGTGGACTAGAATTTTCTAACAGGGAAGCCTTGACATTGCACTTAAGGCTGCACTCTGGTGACAGAACTTTAGTAACGGATTTATGTGGGTTAGCAGCTGCCTTCCAACAAACTCCCGGACACTTTTTAACTCCTAATACTCCTGGAACCCACCAGATGAATGGTCCGATAGGAGCTCCCGGTGTTAGCCATATGCATGGTGCAACGCAAACCTCGCCACCAGTTGGTACAGGTCCTAAACCAAAACCGCATATCTGTCCGGATTGTGGCCGTGGATTTGCTCAAAAGCATGGACTCTCCCAACATCAACGACGTCATACGGACGGCAGTTGTCATATAAGGTCACATGTTTGTGACAAGTGTGGAAAAGCTTTCTTCCAGAAGAATCATTTGTTGTTACATCAACGTCAGCACATGGATCCTCCACCAAGTATACTTCGGCAACAGCAAAGACAAGCTGCGCAGGCTGCTGCACAACAGGCACAACAACAGCAAgcgcagcagcagcagcaagcgcaacaacaacagcaggtgcagcaacagcagcaacaagcgcaacaacagcaacaacaacagcagcagcaggtaCAGCAACAACAAGCACAGCAGgtacaacaacagcagcagcagccacagcaacagcaacaacaaacGTGTACGGTTGATACCAAAACGATCCAGCTACAAGCAATACAGCAGCAAGTTCAACAGCAAGTACAACAACAggtacaacaacaacaacagcagcagcaacagcaacaagcGTGTTCCGTGGACACTAAAGCAATACAGTTGAATGTCACCATGTGA
- Protein Sequence
- MCTTPGNAGAGFGYAWSFGGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPAKNLNSSHRRPMFAMNESCQQTSTTHHGHTGGAHNQTHGSHVRTKKHHDVFPLNCEKGGCQCDASQPTPPPSLFSNTLVFTTGDKHGMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQANANNVATSQTDGTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRVPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICIHCGKSFAHKHCLHTHLLLHSSERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCPDCGATFQRKFELVNHGRLHGRIPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKVDLVTHSKIHNNNTSTDEKSLTCRECGLEFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTPGTHQMNGPIGAPGVSHMHGATQTSPPVGTGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQAQQQQQAQQQQQVQQQQQQAQQQQQQQQQQVQQQQAQQVQQQQQQPQQQQQQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQACSVDTKAIQLNVTM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509061;
- 90% Identity
- iTF_00684308;
- 80% Identity
- -