Pdor012076.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- lola
- Assembly
- GCA_010416905.1
- Location
- QUOG01000015.1:3296771-3302127[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3 4.3e+03 -2.8 0.0 3 20 101 118 101 119 0.75 2 2 5.1e-09 6.7e-06 25.4 0.1 9 40 462 494 461 499 0.87
Sequence Information
- Coding Sequence
- ATGGATGATGACCAGCAGTTCTGCCTTAAATGGAACAATCATCAGAGCACATTGATACAAAATTTCGACACGCTTTTAGAGAGTGGGACGCTGGTCGACTGCACGTTGGCAGCGGAGGGGAAATACCTAAAGGCCCACAGGGTAGTCCTCTCCGCGTGCAGTCCATATTTTGAGGGCCTTCTCAGCGAGCACTACGATAAGCACCCTGTATTCATACTCAAAGATGtaaaatttaaagaattgAAGGCAATGATTGATTATATGTACAGGGGAGAAGTTAATATCTCCCAAGACCAACTAACGGCACTCCTTAAGGCTGCCGAGTCATTACAAATTAAGGGCCTTTCGGAAAGTAAAACGGGTGGTAGTAATGGTAACAATAAATCAGTTTCGAGGGTATCTAAAGTTGCTCCACAACCAAGGTCATCGCCTTTAAATATTTCCTACGCGTCTGCCGGTCTCACCATAGAAAGGAATAGAGTTCCTAGACAGGCAAGTTCGATAGGAGATTTGCCAGAAGACTCGCACAGTCCTCAAATACCTAAGGAACATTCTTCGAGCAGGGAGGGTTCGCAAAGTCCAAcatcaaagaaaagaagaaaacttaGAAGAAGAAGCGCAGGTGAAGATACTTCTGTAGAAAATCATGAAGCATCGAACTCAAGCGATATACCTCAACAAATGGGCGTGCCGGCACTTGCGATAGCACCTGTCGCGGACGAAAAAACGAATGCGGATCCTACGGACTCTCTCGGCAGGTCAGCTTTAATGACACAGTTGACGAAACCTGCCGACGAGATGTTGCAGATGCCTCTCGAAAATCCTGAACCGAGCGATAATCTCATTGAGCCAAAGTCCGAGTATTTGGAGGACCAGGAAGAAAGTGTCGAAGACTTGACGCTAGACGATGACATGaatgatttaaatgaaattgaacAAGACACGAACAGAGCAGGACCTTCCCATGACACGTCCCAACATCCTGGTGGGGGGGCGGGAGCGGTATCGCGGTCTCGAGGGTCGAGAGGGAATGtaggtgttggtggtggtgttggtgttggtctCGTGTTGGTCGATGGTGGTAACGTTGGCGAAGTTGTTGTTGGTGGTGTTGACGAGTGTattggtagtggtggtgatggtagtgTCGTcgttggtggtagtggtggtggtggtgttggtagtGCCGGTGCCACCATATGGGCGTCGCATTTCCTCGATTGTAAAAAAGTGCCGAATACTACGATGACGAGGACGactactacgacgacgactacgacgacaacgagACGTCCTAGACCGGAAGTTGACGTAGGTGCATTACTTAAATCTCTGGCTAACAAACAGGGAAGGAAATATAGTTTAGATTCGGTTAAAATGTCATTGGAAGCGATATTGCAACAGGGCGTTAGCACCACCCAAGCATCAGAGATGTATGGTATCAATCGGTCGACCCtgcaattttatttgaaaaaattgaacgTCGTCAGGAGAAGATGGAGACAACAGCCTAACAGCTTGGTCCAGCCTAGACACTCTTAG
- Protein Sequence
- MDDDQQFCLKWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHRVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMIDYMYRGEVNISQDQLTALLKAAESLQIKGLSESKTGGSNGNNKSVSRVSKVAPQPRSSPLNISYASAGLTIERNRVPRQASSIGDLPEDSHSPQIPKEHSSSREGSQSPTSKKRRKLRRRSAGEDTSVENHEASNSSDIPQQMGVPALAIAPVADEKTNADPTDSLGRSALMTQLTKPADEMLQMPLENPEPSDNLIEPKSEYLEDQEESVEDLTLDDDMNDLNEIEQDTNRAGPSHDTSQHPGGGAGAVSRSRGSRGNVGVGGGVGVGLVLVDGGNVGEVVVGGVDECIGSGGDGSVVVGGSGGGGVGSAGATIWASHFLDCKKVPNTTMTRTTTTTTTTTTTRRPRPEVDVGALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRQQPNSLVQPRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01234270;
- 90% Identity
- iTF_01234270;
- 80% Identity
- iTF_01233741;