Pdom009012.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:429709-438780[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.093 5.6 6.8 0.1 2 20 150 168 149 170 0.93 2 17 0.35 21 5.0 6.4 2 23 205 226 204 227 0.93 3 17 1.7 1e+02 2.8 1.3 1 23 644 667 644 667 0.95 4 17 0.35 21 5.0 0.5 5 23 674 693 673 693 0.93 5 17 0.0022 0.13 11.9 2.6 2 23 699 720 698 720 0.96 6 17 0.0025 0.15 11.7 0.8 1 22 977 998 977 998 0.96 7 17 0.00015 0.009 15.6 1.0 2 23 1006 1028 1006 1028 0.89 8 17 0.011 0.63 9.7 4.0 3 23 1040 1061 1038 1061 0.91 9 17 1.4 82 3.1 0.4 2 20 1090 1108 1089 1110 0.87 10 17 0.38 23 4.8 2.7 1 23 1117 1140 1117 1140 0.90 11 17 1.5 88 3.0 5.3 1 23 1151 1174 1149 1174 0.92 12 17 0.028 1.7 8.4 0.6 1 21 1196 1216 1196 1221 0.94 13 17 0.076 4.6 7.0 3.4 1 23 1224 1247 1224 1247 0.96 14 17 5.7 3.4e+02 1.1 1.6 1 9 1256 1264 1256 1279 0.79 15 17 0.0083 0.5 10.1 0.1 1 20 1326 1345 1326 1347 0.95 16 17 0.00023 0.014 14.9 0.6 1 23 1354 1376 1354 1376 0.96 17 17 1.8 1.1e+02 2.7 1.3 1 23 1386 1409 1386 1409 0.87
Sequence Information
- Coding Sequence
- atgGCACGAGCTCATCAATACATAAGACTATTGGATGATACAACTACTGAATTTGATACTCCACAAATTTCTGatTCTAATGGAGAAGAAATCATAATCAAACAAGAGCCATGTGACATGAATGATGCAAAGATGAATGACAATTGTGTATTAACTAATACACAGCACAAAGATAACAATCCAACCAAGAGTAATAGTAGTCAGGAAAAAAATGTTCCTTCTACTGTTAAAAATCTCAGTAATGGTGTAATAACTAATCCAAACAAAATAGTATCTATTTCAATGGATAATGCAATAACTACAAATAGTAAGCATATACAGCAAGAGAAACGTTCAGTTATCTTAGATGAAAGTGATCAAAAtgttaatacattaaaaacacatgataatattaaaaaatcttctaataaactaaaaaagaattacGTACGGTTACGGCGTAGGATTTATTGTAACATATGTTTATTATCGTTTTCCGGTTGCGCCTCTTTGCTTAGTCATATAgcttattacaaaaaaattcataaatatttttgtaacatttgttCTTCCAAATTTTGTTATCACATTAAAGAgcgaaattttcaaaaattgagGAAAGGTAAATTTTTAGAATGCCATTATTGTTATGCACAGTTTCGTATTAAGTCATGTTTACAAGCTCATGTAGCACATCACCACcacattaaagaaataaatgagatgAACATTGTAGAAAATGATACATCTATGATTAATCATTCGACTGTTTCACATTCTGTTACCCCAATCAAACATAaagtaaaacaacaaaaaaggaacaataaaatgaaaataaaaacagaaagaacaATTCATGAAAATGTACATAACTCTGAAGAGAGTAcgtgtaaattattaacaacgaTTAAACAAGAGGAAACAGAAAACGATGATCAAGTAGATGAATTATCGATGGGTCAAATAGTTTCAAATGTACCGAAAActaaaaacaaaccaaaagaaaatagaacgcATTTTCAACCATTTGTTCAAATACACGTTAATAAGGATATGATGGAAGCTCTTTTTAGAGCTTCAGATAACAGTGTCCTCAACAAATCATTGCAATATGATAGTAACACTGATAGTAATGTTGAtagtaataatactattactaatagtAATACTattagtactactactactactactaataacagtattattagaaaatcttATGCATTGCGTTCCTTAAATAATTCgagggaaaataataatagcgtAACATCGCATACAgttgtacagaaaaataatcaaagcgatgataaattaagtatacttttaaatacatgtaaaaaatgtataattccTTTGGTAAAATGCGATGATATTGTAAatgtaaacaaacaaactaaattgaatttcaatattttacaatctaATACACTATCGTCTGAGATTTTACAATCACAACATAATCATAAATCtattaactttaaattaacaccaagaaaaagaaaacatactACGTCTTTTGATCTAAACAATTGTACTCCACAAATGAATCATTCGGAAGATTTAAATGCAATCAATTCCTCTATCGAAAAATCGCCCATAAAAATCACTCGAAAACGAAGTATTTATGGTTCATTACAATTACCTATAAACAAtgatagtataaataataggaaaaaaagaagaacagaaTATACTTGTAAGAAACTTGTTAAACATCGATTGGTAAGTAATAAAAGGATGTTTGGTCAAAAATCGAAAAGATCTccgagaaaaaataatattaaaaattccgAAGTTTCACCGACTGTTAAGAAActtaatactaaaatattagaaGGCACAAAACTTTCAATTAACAATGTTGAATTAATGGAAGTTAAAGTATCTTTGGTAAAATTACCGGAgattaaaaacgaaataatcaAGTCGACAAATATTAGAAACGAAACTTTTCCTTGTCAAATTTGTAATTCATTGTTGTACTCTGAGAAAAATCGGAAAAAACATGTCAAGAAACTTCACACGGCCTATATTTCGAGTATTTGCAAAGCGAAGTATACCTCGAAACGacttttattgaaacattttttaaaagaacattGTACGTGGATCAGCAAATGCTGCGTTTGTCAAGAATCCTTTAGCAACCGATTATTACTAAAACAACATTTGCTTTtacattgtattaaaataactttatcgAAAAATGATCGTCCTATTTCaaataagaattttcaatgtaaccgattgaaaaaaaacaagtgcaAGCCTACtgctttaaaaataatactgcGAATGCAAAAGCAAAAGCCATCGAAGAAACATCTAAAGATTAATcgcaatgataataattatgatgttAATAAACCAACAGAACATCAGGAAATCTATAATaatggtaaaaataataatggtgaaaatattaatggtaaaaataataatggtgaaaataataatggtgaaaataataatggtaaaaataataatgagaaacAAACGGAACATCAGGAGATTGATAACGGTGAAAGTAATCAAGTAAAAACAACAGAACatgaagaaattaataatgataagaataatgaagaaaaatcattaaaactCGAAGatatctatattaataataatgataatgacgataatgacgataatgacgatgatatagtaatattagaGGATAATTTGAACGCAAATAACGCTGATAATTGTGTTGACTTAATAGAACTATTAGAAAGTGATAATACTGAAGTTCCTTGTTCTAGTAATATGATAGAAAAACCAATACTGGATCCTTCGCAAGTCGTTGACTCaacatttatcatttgtaATCCTATCGAGAATACGCAAACAAAactaacattaaatattagtaattcGATACAACCGAGTGTTAACGACGATAAAAATGAGTCTATAACAGCTGTAGCAGAAATTACagcagagaagaaaaaatatccatGTTCTATTTGTAAACAACAATTTCAAAAGCTTGAAAGTTTACAACAACACAAACGTACGTACGAACCGTCTTCCAGTAATTATTGCTCACAAtgtggaatatttttttcgagtAAAAGTACATTGAAAAATCACACTGATGCTACTcacaatataacaattaataattcatataaaatgcATTGTCAATTTTGTAATCAAGGTTTCCGTACTCAGAACAATCTTCGAATACACGAGTTGCATTATCACGCAATAGCGGTAACtataaacaatagaaaaatcacGGATTTCTTGCAAATTTCGAATGGCAAAAATAATCGATCGGCAGAAACTAGTTGCCAGATTTGCGGCCTATATTTTGACACTGTTGAACGTTATCAGTTACatcatacatatttttctaatgatcATATATTTCCCTGTAAAATatgtaacaaattattttacggATTGTACATGATACACCGTCACAACAAACTTTTTCATCGTTCTGCGGATACTTTGACATTttgtaaatacaaatgtatacatTGTTACGAAGTATTTGCTTCCGAGTTACAATTTAGAGCTCACATGTTTCACGTGCATCCaaacaaacaattaaacaaatcacCGTTAAATTCCATAAACTATAATCaaactaataaattttacgTATGTTTCAAATGTAACATAGCATTTTTTAGTGTTACCGAACTCTTTATACACATTCAAAATTTTTCGAATCACGGCGATTATAAATGTTCCAAATGTTCTCGTCAGTGTTATAACTTGTCGATATTAAACGAACACATGAATTTGACTCATCTCGATAAAAAgttaacgaaaaaatatatgtgtaatatttgCGGCGAAGTTTTATTGTCTGAAACTTTTCTCTTGTGTCATCACAAACACGTACACGatgatttagaaaatgaacaaattgtaTCCACTGATACTAATCAAAATCCTACAAATGATTTATCTATTGACGAGATTACTGATGACGATGTATTAAAAATCGATAATGAACTAGCATTACTTACAAATCCatcaaatttttcttgttcGATATGTCCCGTTAAGTTTGACAaggaaattcatttgaaagaaCATTTGATCGAATATTTGGATTACGGCGATTATCAGTGCAACGAGTGTTCGAGGCGATTCgcaaatattgattttttgaataaacacgcggaaaatcatttgaaaccTGGTATGGCCAAGACTGAATATTATTGCCTTCTTTGCAACGAGGTTTGTAAATCCTCCATGATTCTTGAATCACACGTTGCTCATTTGCATgcacgtattatttttaaagatcatTCACCGAAAGTTGTTTAA
- Protein Sequence
- MARAHQYIRLLDDTTTEFDTPQISDSNGEEIIIKQEPCDMNDAKMNDNCVLTNTQHKDNNPTKSNSSQEKNVPSTVKNLSNGVITNPNKIVSISMDNAITTNSKHIQQEKRSVILDESDQNVNTLKTHDNIKKSSNKLKKNYVRLRRRIYCNICLLSFSGCASLLSHIAYYKKIHKYFCNICSSKFCYHIKERNFQKLRKGKFLECHYCYAQFRIKSCLQAHVAHHHHIKEINEMNIVENDTSMINHSTVSHSVTPIKHKVKQQKRNNKMKIKTERTIHENVHNSEESTCKLLTTIKQEETENDDQVDELSMGQIVSNVPKTKNKPKENRTHFQPFVQIHVNKDMMEALFRASDNSVLNKSLQYDSNTDSNVDSNNTITNSNTISTTTTTTNNSIIRKSYALRSLNNSRENNNSVTSHTVVQKNNQSDDKLSILLNTCKKCIIPLVKCDDIVNVNKQTKLNFNILQSNTLSSEILQSQHNHKSINFKLTPRKRKHTTSFDLNNCTPQMNHSEDLNAINSSIEKSPIKITRKRSIYGSLQLPINNDSINNRKKRRTEYTCKKLVKHRLVSNKRMFGQKSKRSPRKNNIKNSEVSPTVKKLNTKILEGTKLSINNVELMEVKVSLVKLPEIKNEIIKSTNIRNETFPCQICNSLLYSEKNRKKHVKKLHTAYISSICKAKYTSKRLLLKHFLKEHCTWISKCCVCQESFSNRLLLKQHLLLHCIKITLSKNDRPISNKNFQCNRLKKNKCKPTALKIILRMQKQKPSKKHLKINRNDNNYDVNKPTEHQEIYNNGKNNNGENINGKNNNGENNNGENNNGKNNNEKQTEHQEIDNGESNQVKTTEHEEINNDKNNEEKSLKLEDIYINNNDNDDNDDNDDDIVILEDNLNANNADNCVDLIELLESDNTEVPCSSNMIEKPILDPSQVVDSTFIICNPIENTQTKLTLNISNSIQPSVNDDKNESITAVAEITAEKKKYPCSICKQQFQKLESLQQHKRTYEPSSSNYCSQCGIFFSSKSTLKNHTDATHNITINNSYKMHCQFCNQGFRTQNNLRIHELHYHAIAVTINNRKITDFLQISNGKNNRSAETSCQICGLYFDTVERYQLHHTYFSNDHIFPCKICNKLFYGLYMIHRHNKLFHRSADTLTFCKYKCIHCYEVFASELQFRAHMFHVHPNKQLNKSPLNSINYNQTNKFYVCFKCNIAFFSVTELFIHIQNFSNHGDYKCSKCSRQCYNLSILNEHMNLTHLDKKLTKKYMCNICGEVLLSETFLLCHHKHVHDDLENEQIVSTDTNQNPTNDLSIDEITDDDVLKIDNELALLTNPSNFSCSICPVKFDKEIHLKEHLIEYLDYGDYQCNECSRRFANIDFLNKHAENHLKPGMAKTEYYCLLCNEVCKSSMILESHVAHLHARIIFKDHSPKVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -