Basic Information

Insect: Polistes dominula
Gene Symbol: RREB1_1
Assembly: GCA_001465965.1
Location: NW:465020-488964[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.029 1.7 8.4 0.3 1 23 44 66 44 66 0.96

2 15 0.00033 0.02 14.5 0.3 1 23 80 102 80 102 0.97

3 15 1.4e-06 8.4e-05 21.9 0.8 1 23 108 131 108 131 0.97

4 15 0.017 1 9.1 0.2 1 23 223 247 223 247 0.93

5 15 0.023 1.4 8.7 3.5 2 23 253 275 252 275 0.95

6 15 0.34 20 5.0 0.2 1 23 467 489 467 489 0.96

7 15 1.9e-05 0.0011 18.4 0.3 1 23 498 520 498 520 0.98

8 15 0.00083 0.05 13.2 2.8 1 23 526 549 526 549 0.97

9 15 0.00092 0.055 13.1 2.8 1 23 954 977 954 977 0.96

10 15 0.00011 0.0063 16.0 0.1 3 23 1259 1279 1257 1279 0.97

11 15 1.5 92 2.9 4.4 1 23 1285 1308 1285 1308 0.96

12 15 0.005 0.3 10.8 1.0 1 23 1343 1367 1343 1367 0.94

13 15 0.29 18 5.2 4.8 1 23 1471 1494 1471 1494 0.96

14 15 0.0075 0.45 10.2 0.4 2 23 1548 1569 1547 1569 0.94

15 15 0.011 0.66 9.7 5.1 1 23 1575 1597 1575 1597 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.029	1.7	8.4	0.3	1	23	44	66	44	66	0.96
2	15	0.00033	0.02	14.5	0.3	1	23	80	102	80	102	0.97
3	15	1.4e-06	8.4e-05	21.9	0.8	1	23	108	131	108	131	0.97
4	15	0.017	1	9.1	0.2	1	23	223	247	223	247	0.93
5	15	0.023	1.4	8.7	3.5	2	23	253	275	252	275	0.95
6	15	0.34	20	5.0	0.2	1	23	467	489	467	489	0.96
7	15	1.9e-05	0.0011	18.4	0.3	1	23	498	520	498	520	0.98
8	15	0.00083	0.05	13.2	2.8	1	23	526	549	526	549	0.97
9	15	0.00092	0.055	13.1	2.8	1	23	954	977	954	977	0.96
10	15	0.00011	0.0063	16.0	0.1	3	23	1259	1279	1257	1279	0.97
11	15	1.5	92	2.9	4.4	1	23	1285	1308	1285	1308	0.96
12	15	0.005	0.3	10.8	1.0	1	23	1343	1367	1343	1367	0.94
13	15	0.29	18	5.2	4.8	1	23	1471	1494	1471	1494	0.96
14	15	0.0075	0.45	10.2	0.4	2	23	1548	1569	1547	1569	0.94
15	15	0.011	0.66	9.7	5.1	1	23	1575	1597	1575	1597	0.98

Sequence Information

Coding Sequence: atggaTTATTCGACGAAAGtgaCTGTTAAAAGCGAACCAGATCCAGTACAGGAACAGGAAGAGGAACAAGCTGAGATGCAAGCAGATGCAGCATCACCTACTTCTAGtATCGATTTACCTGAAAATACACACCCGTGTCCAGCTTGTCCGTCAATACTTCCAACATCTCACGACTTGACGAATCATCTTCGTGAACATAATTCACCAAGGAGTACAGATTACGGTGGTGAAGAGGATTACTGTTGTGCTATATGCCAAAAAGTCTTAAGTTCGGCAAGTTCATTGGATCGTCATGTGCTAGTACATTCTCGTGAAAGACCATTCAAGTGTAAATATTGTGACATTGCATTTACAACCAACGGTAATATGAACAGACACGTTAAAAGTGCTCATCGTGGTGAAAGATCACCGTTACAAAGTTATACGGAATCTGAAAGTACCAGCAACGATTCGGAAAATTCACCTAGAAGACAACAAATGGAAGAACAtaacaataatgaaatatcaaaacgTACATCGCCAAATTTCATGATTAGAGAAAGAATAGCAAATAAACGTAAATCACCGTCGTTTACCAGAGAAGATGATAATCCGCGTagacataaaatattattgaacaaTTCTAGAACAGAGATAAGACGGATATCTACGGAAACACAAAAAGCTTACAATTGTCCTGTATGTAATAGACAAGATTTCGCGACTAGCAGTTTATTGGAAACACATTTGGAACAGAATCATCCCGAATTTACAGTCAAGTGTGAACAATGTAacatttcattcaaaaatcatcgtgtattaaatttacatcGACACATGATACACTTTTCTGACGTTGAAATACCCGCGAAAAATTCAAACAACGAGTGTGTAGTTGGCTTTCAAGATTTAACATTTGTTGATTTTACATCGGCTAAATTCCCAACTATTGCTAGGGCTGTGTGCGAGCAAGAGATACACCGACCAGCATCCGGGGAAGGTACCAACTTCCAATGCAGCAAATGTTCAAGAGCATTTCCCTGTTTCAAGTCAATGAAAGAACATCAAAATGAATGTGGTAAGTGTAGGCCAAGTTTGCAATGTAGTCCGATAGATAACGGGGAATCCCAGAGGGATGATTTTTTCGCGGGACTCGAATTGCACAATAAAGCTGCATTAAACGAGGCCAAAGATGGAAAGGATTTAGCAGATATTGAAAGCATTTTGTCGGTTACTTCCGGtccaattttacaaaattttcccCGTTCGGATGCTAGTACacctgaaaataatattaaatttaattcgagCGTTGGTTCTTCTTCTGGTTCATCAGGAACGATGTCGTCGGAGTATCACGAGGAAGAGGCACAGGATTTATTTGCTGCCGAATTTAGGAAGATGAAATTAAAAGGAGAATTCCCATGTAGATTGTGCACATCGATATTTCCTAATTTGAGGGCATTGAAAGGACATAATCGTGCTCATATGGGTGTAGGACCAGGAGTACCATATCCATGCAACATGTGTCCATATACCAGCACGGATAAGGCAACACTTGTAAGACATTTAAGATCTCACAACGGTGATCGGCCATACGAATGTTCCCTCTGCAATTACGCTTTTACCACTAAAGCTAATTGCGAGAGGCATGTCAGAAATCGTCATGGTAAATTAACCAGAGAAGATATCAAAAGTGTTTTGATTTATCATCCGAACGAAGACTCGACCAATGATAATATTGGTACTTCTCCTAGAATGATGAAAGATGAGACGAGAAAAAGTTTGATCTATCCGAATGACAGAGAAGATTCTatacatcaacaacaacaattgcaacaacaacagcaacgtTATCTGTCAATGCCGGTTGATACCAAAGGTGACATTAGAGTAATAGAAGAAGCTAAATTACCTAGCACCGAATTGGCATCTTCTATTCGCAATATGATAGTTAATCATTGCGaaagtaataatgataattacgTTAGATCAAACATAACAGGTTCCGGTATTATTTCAAGAACCATGGAAGAAACTACTACGTCTCAAGATCAAAGTGGAAGGATTGATGATGATTTTGAATCAAGATCATCCAATGAAAGTATTCCTCTAGTCATTAATAACGAAACAGATATGCACCAAAGAATCCAAGCTAGTCCGatgaatttgaagaaaatgtcTAACACGTCTAATGCGGTCAATTCAAATCAGGATGGACCATTGGATCTTTCAATGGACGTTTTAGATTTGAGTAAGAAAGCTAAGGAAAGAAACGGTGCTGCTGGATCATTAAGATCCAACGAATATCCTAATAACGATCATAGAGAATTTTACGATTCTACAAATCAATTATTGCTTACTCAAGCTTTGTTACGAGCAAGCCAAGGTACCTCACCGGTTACTTCGCCAGGTATCTCTCAAGGAAATTCACAAACGAATACTTTGCAAAATTTTTATGCCAGTGCTCAAATGATTTATCGCAATTTGGGAACAATTTCTAATGGCGTTAACACCGGACTTTTATCaccatatttatttaattcgcgTTTTTTTGGACAAGATTTAAACATCAGTGACAGAATTCACAGCGAATTTTCTAGGGGTTTGCAATTAACCAGCGGTGGTACTTTGGTTGATCCATCGGGAAATTCAAATTTTAGCGGATTTCCACAAACCAACGATGCCCCACCATCGCAAATTGTAACCGATCAAAATGATTACAGCAATTTGCTTAATACAAAGATGACCAATAAGACGATATCACCACGTGAAAAGGTTGACAATAATTCGGCTTCTACGAATTCGGTTAAAATGATCATCAAGAATGGCGTGTTAATGCctaaacaaaaacaacgaaGATATCGTACTGAACGACCATTCTCTTGCGGACATTGTACAGCTAAATTTACTTTACGAAGTAACATGGAAAGACATATTAAACAACAGCATCCTGAATTTTGGAGTCAACGACCACGCGGTGGTCATTCAACGAGAGGTAGACCACCATcgaatcataataatatattgaaaaattctgGACACTCTAATTCACAATCTTTGTCTCAATCTTATTCCAACATATTACCCAAAAGTGAACCATCAACAACGACGATAGAAACAACTGGTAGACATTCGATTTCAGATCAAGTGAAATATGCTATTTTGGCTCAACAATTGAAAGCCAATAAAATGGACGATAATGATACCGATGAAGAATTAATCATTGATGAAGATCCCGTTGATAAAGAGGTGCAAGAATCTCGTGAACAACGTTCAACGAGTTTGTTGAGAGGACAATTAGAAGGTAACGAATCTAGCAAAGATGTCGTAATGAAGGAAGAAATATTAGACAGAAATTCAACTGATCTATTTAATAACGAACAATCTAAGGAACATAACAATACCAATGAAAATGGCCAAAGTTCTAGCAACGAACacaatgaaaaaatagaagaaacctCTATGGATGCTAATTCAAGACAAACCTTTAAAATGGATCATAGCAATGATACTACCATTCAAGACAGACAAGAGGATAATACTGCTGATCTTGCTAGTGTTTCAGAATTATTGGACAACGCTTCTCATCAATATCAACATTTTCAATCTCAATATTTGAGCGACGAAGAAGGTTTAGTCGCATCTAACAGCGATTTCAATAATTCCGGTAGCGATGATAAATCCGATTCAGTTAATTCCGGAAATTTTAACAACGCTTCATcaaaacagaagaagaagaaaaaaaagaagaagaagaaatcggCTTATTCGTTAGCACCTAACAGAGTAATATGTCCTTATTGCGAACGACCATTCCCATGGAGTTCATCCCTAAGAAGACACATCCTTACACATACTGGACAAAAACCATTTAAATGCGTATACTGTTCACTTTGGTTTACAACCAAATCTAATTGCGATAGACACCTATTGAGAAAGCACAAAACTAATCCCTATAAAGTAAGAAGAGCTAGAACTTCATCATCACCTGAAgttattcatttgaataatgCATTTTCTATGAGAAATGTTCCCGAAAGACCATACAAATGTAATCAATGTCCAAGTTCAACGTTCTCAACTTTGGGAAATTTGAAGAAACATCTTTCGGCCAAACATTCgcgtaaaaataaatcgagatCAGTTTCATCGTCTACCGAGACACAAAATAGTCCTTTACCGTCATCCAAACAACAAAACAATGATCTTAGCGATTACGAGAGTAGATCATCAAGCGTATCGGATAATACggatcaacaacaacaacaacaacagcagcaacagcagcaacagcaacagcaacagacATCACCGTCCGAAACTCAGAAACAAAATTCCAATAATTCAACAACATCTTTGTCCAATAACGAATTACCAAGATCACGAAGAACTTCACCAAGATCATCACCAGGTCCTAATGATGTACCATTCAAGTGTCATCTTTGTGATTGCGGATTTGCCGATCGTAACGATTGTTTAGAACACATCAAGATCAATCATAATGAATCTTATGAGATGCTAGTAGCAAAAGGTGCTATGGATATGGACATTGATGGGTTGGAAGATCATCAAGTACAACAACCACCTCCTCAACAACAACATCCTAGCGATggggaggaaagaaaaggacgaTATCCAGATTACAGTAACAGAAAAGTAGTCTGTGCTTTTTGTATGAGACGATTTTGGTCAGCCGAAGATCTACGTCGTCACATGAGAACACATACAGGAGAAAGACCATTCTCATGTGACATTTGTCTTCGTAGATTTACATTGAAACACAGTATGCTGCGTCATCGTAAAAAACACGAATCTGTCGATTCAACGATGTACGTTTGTACCAGCGGTGACGAGGAAAATTCACCAACACAACCGCCAACGATTACACCACGCACGCAGAAACAACCACCAATTTTAATGGCcaccaatataaataattcaagaatTCAAGATAGAATTTCATCGTCTGTTGCTACCGGTGATGCTGCACCTGGCGGTGGTTTTATGAGATACAAtagttatgaaaaattaacaacATTTGCCGGAAAACTTACCGCCGCCAATAACACacaaattcataataatacaattaacaatGATTCAAACGAAAATACAGATAACGATTTGATCTCAAATCTATTAGGAATACCCGACAAAAGTTTCATTGATAAAGTGCTACAAGCATCACCGGACGATGCTGCTAAATTGTTAGGCGTACAACGTAGCcaagaatga
Protein Sequence: MDYSTKVTVKSEPDPVQEQEEEQAEMQADAASPTSSIDLPENTHPCPACPSILPTSHDLTNHLREHNSPRSTDYGGEEDYCCAICQKVLSSASSLDRHVLVHSRERPFKCKYCDIAFTTNGNMNRHVKSAHRGERSPLQSYTESESTSNDSENSPRRQQMEEHNNNEISKRTSPNFMIRERIANKRKSPSFTREDDNPRRHKILLNNSRTEIRRISTETQKAYNCPVCNRQDFATSSLLETHLEQNHPEFTVKCEQCNISFKNHRVLNLHRHMIHFSDVEIPAKNSNNECVVGFQDLTFVDFTSAKFPTIARAVCEQEIHRPASGEGTNFQCSKCSRAFPCFKSMKEHQNECGKCRPSLQCSPIDNGESQRDDFFAGLELHNKAALNEAKDGKDLADIESILSVTSGPILQNFPRSDASTPENNIKFNSSVGSSSGSSGTMSSEYHEEEAQDLFAAEFRKMKLKGEFPCRLCTSIFPNLRALKGHNRAHMGVGPGVPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNDNIGTSPRMMKDETRKSLIYPNDREDSIHQQQQLQQQQQRYLSMPVDTKGDIRVIEEAKLPSTELASSIRNMIVNHCESNNDNYVRSNITGSGIISRTMEETTTSQDQSGRIDDDFESRSSNESIPLVINNETDMHQRIQASPMNLKKMSNTSNAVNSNQDGPLDLSMDVLDLSKKAKERNGAAGSLRSNEYPNNDHREFYDSTNQLLLTQALLRASQGTSPVTSPGISQGNSQTNTLQNFYASAQMIYRNLGTISNGVNTGLLSPYLFNSRFFGQDLNISDRIHSEFSRGLQLTSGGTLVDPSGNSNFSGFPQTNDAPPSQIVTDQNDYSNLLNTKMTNKTISPREKVDNNSASTNSVKMIIKNGVLMPKQKQRRYRTERPFSCGHCTAKFTLRSNMERHIKQQHPEFWSQRPRGGHSTRGRPPSNHNNILKNSGHSNSQSLSQSYSNILPKSEPSTTTIETTGRHSISDQVKYAILAQQLKANKMDDNDTDEELIIDEDPVDKEVQESREQRSTSLLRGQLEGNESSKDVVMKEEILDRNSTDLFNNEQSKEHNNTNENGQSSSNEHNEKIEETSMDANSRQTFKMDHSNDTTIQDRQEDNTADLASVSELLDNASHQYQHFQSQYLSDEEGLVASNSDFNNSGSDDKSDSVNSGNFNNASSKQKKKKKKKKKKSAYSLAPNRVICPYCERPFPWSSSLRRHILTHTGQKPFKCVYCSLWFTTKSNCDRHLLRKHKTNPYKVRRARTSSSPEVIHLNNAFSMRNVPERPYKCNQCPSSTFSTLGNLKKHLSAKHSRKNKSRSVSSSTETQNSPLPSSKQQNNDLSDYESRSSSVSDNTDQQQQQQQQQQQQQQQQQTSPSETQKQNSNNSTTSLSNNELPRSRRTSPRSSPGPNDVPFKCHLCDCGFADRNDCLEHIKINHNESYEMLVAKGAMDMDIDGLEDHQVQQPPPQQQHPSDGEERKGRYPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICLRRFTLKHSMLRHRKKHESVDSTMYVCTSGDEENSPTQPPTITPRTQKQPPILMATNINNSRIQDRISSSVATGDAAPGGGFMRYNSYEKLTTFAGKLTAANNTQIHNNTINNDSNENTDNDLISNLLGIPDKSFIDKVLQASPDDAAKLLGVQRSQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01512393;
90% Identity: -
80% Identity: -