Basic Information

Insect: Polistes dominula
Gene Symbol: -
Assembly: GCA_001465965.1
Location: NW:1376078-1381164[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.76 46 3.9 0.2 3 23 271 292 270 292 0.96

2 10 2.1 1.2e+02 2.5 3.6 1 23 298 320 298 320 0.98

3 10 3.7e-05 0.0022 17.5 1.0 1 23 326 348 326 348 0.96

4 10 0.00063 0.038 13.6 2.5 1 20 354 373 354 376 0.93

5 10 1.5e-06 9e-05 21.8 1.9 1 23 385 407 385 407 0.97

6 10 8.3e-08 5e-06 25.8 0.5 1 23 413 435 413 435 0.98

7 10 6.3e-06 0.00038 19.9 0.6 1 23 441 463 441 463 0.96

8 10 9.5e-06 0.00057 19.3 2.9 1 23 469 491 469 491 0.98

9 10 0.00051 0.031 13.9 5.2 1 23 497 519 497 519 0.98

10 10 0.00012 0.0069 15.9 5.8 1 23 525 548 525 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.76	46	3.9	0.2	3	23	271	292	270	292	0.96
2	10	2.1	1.2e+02	2.5	3.6	1	23	298	320	298	320	0.98
3	10	3.7e-05	0.0022	17.5	1.0	1	23	326	348	326	348	0.96
4	10	0.00063	0.038	13.6	2.5	1	20	354	373	354	376	0.93
5	10	1.5e-06	9e-05	21.8	1.9	1	23	385	407	385	407	0.97
6	10	8.3e-08	5e-06	25.8	0.5	1	23	413	435	413	435	0.98
7	10	6.3e-06	0.00038	19.9	0.6	1	23	441	463	441	463	0.96
8	10	9.5e-06	0.00057	19.3	2.9	1	23	469	491	469	491	0.98
9	10	0.00051	0.031	13.9	5.2	1	23	497	519	497	519	0.98
10	10	0.00012	0.0069	15.9	5.8	1	23	525	548	525	548	0.98

Sequence Information

Coding Sequence: ATGATGACGGAGCCGGATCTTTGCCGGCTCTGTGCCGAGACCAAAGAAAACCTCATCGGTATTTATGACGCCGAAGGACAAAAATTAGCGATAGAAGCTAAAATCACTAAGTGTTTACAAATTCAgGTACTAATAACAGATGAATTACCGCTCTCAGTTTGTATAGACTGTTGCGTATCATTAAATCAGTGCTGcgaattttttgaaaagacTAATCAAGCTCAAACATCATTGAGACAATTACTAATAGAGCCCAAGTCTGAGCCATCGACTTTAGAACcaaatatagattttattaagaaaactGTTGAGTTCCCAAAAGTAGAAGAGGTTGTTGAAACTATCGATGAATGTCAACTAACAGATAACTACATTCATAATACTGCTGTAGATATTACAAATACTTATTTtagtaatgaaaatgaaaatgaaaatgacaacgataatgaaaatgaaaatgatcatgatcatgataatgataatgataacgataatgattgcaatcaagaaaaatatgagTCTATGAAACAACAGAAATGTAAAATTCAAGTTAAAAAAGGTTTGCCCAaacaaacgaagaaaaaggtCAAGAAGAAAAGTCAAATGCAAAGAATGGATGACTTGGAATTATGTTTAAATTCTGATATAAAGAAAGGacataatgatattaatattaaatctaatattaaagttCCAGATAATTATATGACCGGAACGGATTCTGACTTGGAAATGATAGAATCTCGTGCAGCAGAACCACCAAAACCTGGACGCAAAAGAGGAGAAGGATTAGATAGATATCCTTGGCTATGTACCGATTGTAATGACAAATTACCAAGTTTAGAAGCATTGGAAGAACATCATGAAACTGAACATAATCAACAAgctaaatatatgtgtgtacaatGCTGCAAAGTGTACGACAAATATTATGGTTTTCTTACCCACGTTAAAAGACACAAAACTAAAGCTAAATTTAATTGTGAGGATTGTGGGAAATCATTTGTACATAAAAAAGTTTTAGACTCGCACAGAGCAGTGCACAGTGAGGAACGTCCGTTTGTTTGTCAAACTTGTGGTAAAGCATTTAGACAACAAAATGGTTTATACATTCATAGTAAATGTCATTTACCAGATACTGTGAAAAATCGTCACCCTTGTGATCAATGTGATAAAAgGTTTTCTACTAAACCTAATTTGGTCACACACAAACGCATACATTCTGGAGTTAGAAATTTTACTTGCGATCAATGCGGTAAAAGTTTCGTACAAAAAGGAAATTTAGAAGCTCACTTCTTAACTCATTCCGCTGACAAGCCATATAGTTGTTCTCAATGTCCTAAAGCatttaaaaCACCTTTACAATTGAAGAAACATGAAACAGTTCATACTGGGGCTAAACCACATCAATGTGCTGTTTGTGGTAGAACGTTTAGAGAAAAAGGTACTTTAAGGGAACATCATAGGATACATACAGGTGCAATGCCCTTTACTTGTGAATTCTGTGGTAAATGTTTCCGGTTTAAAGGAATTTTAACGacaCATAGACGACAGCATACTGGTGAGCGACCATACAGTTGTTTAGAATGTCAACACCACTTCACAAATTGGccgaattataataaacatatgaaACGTAGACATGGAATTAATACTTCTCATACCAAGCATTTATCACAGTCTCAACAATCGCAGCAGCAACAATCGCAACAAcaggaacaacaacaacaacagcagcaacaacaacaacattcgATTCAAGCTAATACAGCAGAAGATCCTCTTTCCATGTCGCAAACAGAATCAACAACTGTACagGTAATACAAACTGTACCACACGTAACTGCACCTCAACCGATAGTCGTACAAGCTATACCAACAACAGCAATACAAACTTTTCAAGCAGATGTATCCGGCACAGTACAAGATACTGTTTTTCGAGAAAGAAATTCGGCATATTTCAATGCgatgcaaaatatttttccccaAAATTTACCttataacttttataatattcctaatGTTACGGAAACCGATCTAATGCAGCATAGATAA
Protein Sequence: MMTEPDLCRLCAETKENLIGIYDAEGQKLAIEAKITKCLQIQVLITDELPLSVCIDCCVSLNQCCEFFEKTNQAQTSLRQLLIEPKSEPSTLEPNIDFIKKTVEFPKVEEVVETIDECQLTDNYIHNTAVDITNTYFSNENENENDNDNENENDHDHDNDNDNDNDCNQEKYESMKQQKCKIQVKKGLPKQTKKKVKKKSQMQRMDDLELCLNSDIKKGHNDINIKSNIKVPDNYMTGTDSDLEMIESRAAEPPKPGRKRGEGLDRYPWLCTDCNDKLPSLEALEEHHETEHNQQAKYMCVQCCKVYDKYYGFLTHVKRHKTKAKFNCEDCGKSFVHKKVLDSHRAVHSEERPFVCQTCGKAFRQQNGLYIHSKCHLPDTVKNRHPCDQCDKRFSTKPNLVTHKRIHSGVRNFTCDQCGKSFVQKGNLEAHFLTHSADKPYSCSQCPKAFKTPLQLKKHETVHTGAKPHQCAVCGRTFREKGTLREHHRIHTGAMPFTCEFCGKCFRFKGILTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSHTKHLSQSQQSQQQQSQQQEQQQQQQQQQQHSIQANTAEDPLSMSQTESTTVQVIQTVPHVTAPQPIVVQAIPTTAIQTFQADVSGTVQDTVFRERNSAYFNAMQNIFPQNLPYNFYNIPNVTETDLMQHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01233846;
90% Identity: iTF_01232565;
80% Identity: -