Basic Information

Insect: Polistes dominula
Gene Symbol: -
Assembly: GCA_001465965.1
Location: NW:556208-562412[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.017 1 9.1 0.2 6 21 12 27 6 28 0.86

2 13 1.2 70 3.3 0.0 2 20 34 52 33 54 0.90

3 13 0.23 14 5.6 0.7 1 12 236 247 236 256 0.88

4 13 0.00011 0.0064 16.0 0.7 2 23 394 415 394 415 0.97

5 13 0.00011 0.0069 15.9 4.4 1 23 426 448 426 448 0.98

6 13 0.002 0.12 12.0 0.2 1 23 467 488 467 488 0.94

7 13 0.00043 0.026 14.1 0.1 2 23 494 515 493 515 0.95

8 13 3.1e-05 0.0019 17.7 4.8 1 23 541 563 541 563 0.99

9 13 1.3e-06 7.7e-05 22.1 3.9 1 23 569 591 569 591 0.97

10 13 0.00072 0.043 13.4 3.9 3 23 599 619 597 619 0.97

11 13 9.5e-07 5.7e-05 22.5 0.8 1 23 625 647 625 647 0.98

12 13 6e-05 0.0036 16.8 0.2 1 23 651 673 651 673 0.99

13 13 6.2e-05 0.0037 16.8 0.2 1 23 681 703 681 703 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.017	1	9.1	0.2	6	21	12	27	6	28	0.86
2	13	1.2	70	3.3	0.0	2	20	34	52	33	54	0.90
3	13	0.23	14	5.6	0.7	1	12	236	247	236	256	0.88
4	13	0.00011	0.0064	16.0	0.7	2	23	394	415	394	415	0.97
5	13	0.00011	0.0069	15.9	4.4	1	23	426	448	426	448	0.98
6	13	0.002	0.12	12.0	0.2	1	23	467	488	467	488	0.94
7	13	0.00043	0.026	14.1	0.1	2	23	494	515	493	515	0.95
8	13	3.1e-05	0.0019	17.7	4.8	1	23	541	563	541	563	0.99
9	13	1.3e-06	7.7e-05	22.1	3.9	1	23	569	591	569	591	0.97
10	13	0.00072	0.043	13.4	3.9	3	23	599	619	597	619	0.97
11	13	9.5e-07	5.7e-05	22.5	0.8	1	23	625	647	625	647	0.98
12	13	6e-05	0.0036	16.8	0.2	1	23	651	673	651	673	0.99
13	13	6.2e-05	0.0037	16.8	0.2	1	23	681	703	681	703	0.97

Sequence Information

Coding Sequence: atgggaTCATTGAATCTAATTTGCCCAATGTGCTGTGGTGAAACATTTAACGATCCACAGTCATTGAAGTACCACTTGCTCAGCATGACGGACAATTTGTATTGTCCTGGATGTTCGCAGCGTTCAGATTCGGTAATGGCCTTGATACAGCACTTGGATAGATGCGGCCAAGACTTTAATCCAAAGGAATTTGAagatattaaagaaaacaagaagcAAGAAACTTGTAAGGAAACAGTCATAGCTTCTGAGGTCTTAATgGATACACATATTGAGCAGATTAATCAAACTTTTCTAACgactgtaaataataatgatataatgaTAGTAGGAGAATCTGAAACTATACGAGTTGACGAAAATGGAGACATtaaagtaatagaaaagaCTGGTATGGAGAAATCAGAAGTAGATCATAATTCGTTGGacttaaaaatgaatgaaaaattaaatgatatcgTTGACGTTGAAAGAGATGATAAATCTTCGATGTCAAATACATTGGTAACTCCATCAACCTCTGGCACAGAAGATATAtcagaagataaaaatataataaccatTTTATCCGGTGGTTCGGAACTTTTGGATGGAGGTGGTAGTGCCTTGATAAATATGGACCATATAAATGATGTTGGGCAACTTGACGAAAGTGGATTACTTCGTGTTAAACAGGAGATCTCAGAgCTAGAACCAGAAGCAGTTTATAGCTGTACAACTTGCGACATGAGCTTCAATTCCGTTTTTGAACATATTAACCAGTTTCATGATGGACAAGAAGTGTTACTCGAAATGGCAGACCAGTTGGACGATTTATCATCTGTACCCACAACTTCTGTTCTCCCAGAGGAAACTGATAATACTGCTAATACGCAATCTCAAACTATGAATACACTTTATACTGAAGAATGTGTAGATAGTGAAGGAAGATTATATACTAGAAAAGTTGTTCAAGTAGAAAGATTTTGGGATAGAAATTCAATGGAAGTAGTACCACCAGTGCAATCCGCTAAGGCGCCAATGATTGagaaatttttttccaatgtAGAAGGCGTTAAGgtgagagagaagaggataGTTCCTACGTCAGTGAAAATGTACAGATGTAATAATCAAGGTCTCGAACAATTCAATAAACTGACAAATTTTCGAGAGCACGCATGTCTTCGGGGAAATAATCGTTGTGATACTTGCGATCAAACTTTCGCAACGTCAAAAGCGTTACAACTTCATTCCAAGGTACACGAGGCTGAATCTGATTCTAATCAACGAGTATTTGTATGTCCTACGTGCGGTACGGAATTTTGTTCTCACAAAAGCTTACGATTGCATTCTCGTATGCACGCGCCGGTGAGAGCAAGACATGTCGATGCACCGGAAGGACATCGAGATGCGACCTTTACTTGTCCCGAGTGTGGTAAAACTTTATCAGAATCGTATAAAGAAGCGCACATGTCATTGCATACAGGTGAATCTGTAACTTGTACAGTTTGTAACAGAAAGTTTGACTCTGCTGATAGTTTAGCGATGCATGCCGCGGTCCACACCGAATTGAGTCAATCACATTCTCCGACTCCTCCTACGAGCGAAGTCAATGAGTCGACTGAAAATCAAAAACCCTATCAGTGCCAACACTGCGGTAGAAGATTTACTAGACCGCACGAGAAGGTAAAACACGAACGTATTCATACCGGAGAGAAGCCTCATATTTGCGAAGTTTGTGGAAAAACTTTTCGTGTTTCATACTGTTTGACGTTACATATGAGGACACATACAGGAGTAAGACCATACGGCTGTCAACATTGCGGCAAAAGGTTTAAAGCTTCTTCTGTGTATAATCATCATTTACTTACTCACGGAGAGGAGCGTGCTTATACATGTCCTTATTGTCCAAAAACGTTTAAAACTAGAGTACAGTTAGCCGGTCATAAGAATAGTCATACCAAGCCATTTCGTTGTACGGAATGCTCGAGACCTTTCGCATCTTTGTACGCGGCAAGAGCGCACATTCAAACGCATAAGAaagacaataatttaaaatttagttGTAAAATCTGTGGAGCGTCTTACGGTAGAGCGTTTGCTTTAAAAGATCACTTGAAACAGCATGATCAAGATACATTGATTCTCCCGGAGCCTGCACGAGAGGAAGAAGTACGCGAAGCTGGTAATTTCTTGTTTACAGAAGAggatattgaagaaaaattaattattccatCTTCTATAACTGTCGTACAATCTTCTGAGCCAGAAGATACGGATTAA
Protein Sequence: MGSLNLICPMCCGETFNDPQSLKYHLLSMTDNLYCPGCSQRSDSVMALIQHLDRCGQDFNPKEFEDIKENKKQETCKETVIASEVLMDTHIEQINQTFLTTVNNNDIMIVGESETIRVDENGDIKVIEKTGMEKSEVDHNSLDLKMNEKLNDIVDVERDDKSSMSNTLVTPSTSGTEDISEDKNIITILSGGSELLDGGGSALINMDHINDVGQLDESGLLRVKQEISELEPEAVYSCTTCDMSFNSVFEHINQFHDGQEVLLEMADQLDDLSSVPTTSVLPEETDNTANTQSQTMNTLYTEECVDSEGRLYTRKVVQVERFWDRNSMEVVPPVQSAKAPMIEKFFSNVEGVKVREKRIVPTSVKMYRCNNQGLEQFNKLTNFREHACLRGNNRCDTCDQTFATSKALQLHSKVHEAESDSNQRVFVCPTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGHRDATFTCPECGKTLSESYKEAHMSLHTGESVTCTVCNRKFDSADSLAMHAAVHTELSQSHSPTPPTSEVNESTENQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHICEVCGKTFRVSYCLTLHMRTHTGVRPYGCQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCKICGASYGRAFALKDHLKQHDQDTLILPEPAREEEVREAGNFLFTEEDIEEKLIIPSSITVVQSSEPEDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01234502; iTF_01235180; iTF_01512339; iTF_01233813; iTF_01232544;
90% Identity: iTF_01235180; iTF_01234502; iTF_01233813; iTF_01232544;
80% Identity: -