Pdom004507.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:281835-287863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.7e-05 0.0052 16.3 1.6 1 23 318 340 318 340 0.97 2 12 0.0025 0.15 11.7 4.0 1 23 344 366 344 366 0.98 3 12 0.0014 0.082 12.5 6.5 1 23 371 393 371 393 0.96 4 12 3.8e-05 0.0023 17.4 2.1 1 23 446 468 446 468 0.98 5 12 0.00056 0.034 13.7 1.4 1 23 473 495 473 495 0.97 6 12 0.0002 0.012 15.1 2.3 1 23 546 568 546 568 0.98 7 12 9.3e-05 0.0056 16.2 1.0 2 23 576 597 575 597 0.97 8 12 7e-07 4.2e-05 22.9 2.1 1 23 607 629 607 629 0.96 9 12 0.00016 0.0096 15.5 1.6 1 23 635 657 635 657 0.97 10 12 8.2e-05 0.0049 16.4 0.6 1 23 663 685 663 685 0.98 11 12 3.4e-06 0.0002 20.7 2.0 1 23 691 713 691 713 0.96 12 12 6e-05 0.0036 16.8 0.3 1 22 719 740 719 740 0.96
Sequence Information
- Coding Sequence
- AtgaattcaaataattgtttcaatttatctCCTAATATGGAGAGAATGTGTAGAATATGTTTAACCGAaagtaacaatttaatatctattttttgtcCTAATCAAGAGGACGATAATTATCTAGGACTTGCACAAAAAATTCAAGTATGTGGTTCAATAGATATTCATGAGCAAGATGGATTACCATCTTTGATCTGTgaaaattgcatttataaaGCAAACATTGCTCATGACTTTAGACAACTATGTCAACATTCCAATACCAGACTacgattgtattataataatcctgGAAAATGCAATGTTATGGATTCTTGTACACAAACAGATCTCTCTCCATGCATTGAATTAccaaaacaaataacaaatacgCAAGACAATTCTTTCGTTAAACAAGAAATGCAAATAGTATCTAATTCacaagattttaataatactaataatacttttactaCAAATACACCCAATCTTGCAACTACTGACATTGATATGCAAGATGATAAAATTTTCATGAGTTCTATCGGTTTTGAAGGTTCTACTAATAAAGTCATTGGTAAAGAAGAATgttcaatagaaaataatatcaatcaaGGTTCAGCTATTGAATCTGCTTCTCAAATAGATACATGTGATATCTATAGAATGATGGACGTTGATGATAAACCACAAATGGAGGAACATGGTATTAATACTAAAGAATCAGACAAACATTCAAATTCAAAAGCAGAAGAGGAAGATGacgaagatgatgaagatgatgagaTGGATGAACAACAATTTTCAACTGAACGTATGTCTGATGATACAGGAACGGAAAAGGAAGCACCTCCACAGAAACGTACGTCAAGTAGGAAGACAAAATCAATGGCAAACAAAACTTACAGCGAAGATGAAggtgatgataattattatgatccTAGTAGCGATAGTCAAGATTCGgaagaattaaaattcaaatgtaaaatttgtttgaaacgTTACGCCACGCAGAAAGGTTTGAAAAAGCATTCTCTTGTTCATGAAAAAAAGCACAAATGTAATAtctgtttgaaattattttataaacaggAAAATATGGAAAAGCATAAAAAGATACACGCGTCTAAACCACACGCTTGTCAATTGTGTCATGCGTGTTTTTCCAAATCTCAAAGTTTAATACGCCATTTAAAGTCACATACGGAAAAGGTAAATGATATGATTAAACAGATAAATACGGATGAACGTAAAGACGatgaaaatacgaaaaaagaaccaaaatgTGAGGATGATACTGAAGATGAAAGTTGCGTTAACGTAAACGAACCAGACGAATTTGAAAATGCTCctgaattatataaatgtgaaaTTTGCGATCAGTACTGTtcttcattgaaaaatttaaaaagacacGCTCTCATACAtggcgataaaaaatattcatgcaCAGTATGTAAAAAATGGTTCTTCAGACCAGACACGTTAAAAAAACACGCCGAAAAGCATGGACATGGATTATTGGATAATTTAGCAGAggataacaaattatttgattcgGACGACGATGCTTTTCCAAATGATACGACGACAACTAATACTTTACCAGATAATGAAACTATTAAGAAAGAAGATAGCGAAGAAGATGGTTCTGGTGAATACAAGTGTCAACATTGCGACAAAATTATGGCTACTAAGAAAGGTCTTAGGCGTCACGTGTCCATGCACAAGCCTAAAGCCGAACCAGTAACTtgtgaaatttgtaaaaaagttTGTGCTAGTCAAGCTCGTCTTGTTCTTCATCAAAGGACACATAAACCTAAGGAAAAAGTGCCACGAGAATATTTATGTCATATTTGTAGCAAGGTATATCCGAGTAATTCGTCACTAACATACCATATGAGAACTCATTCAGGAGTGAAACCACATGTTTGTAAAACATGTAACAGTGGATTTACAACAACTACCAGTTTGGCAAATCATATTCGTATTCATACGGGAGATAAACCTTATGTATGTCATGTTTGTAGTGCAGCATTTGCTGTTAGTTCAGCATTTAGGAGACATTTGACACGACATACAGGTGAAGCTAATTATCTCTGTAAAACGTGTGGCAAAGCTTTCAAACGACTTAGTACACTGAAAGAACACACTTATACACATTCTGGTGAAAAACCTTATGTTTGTAAAACTTGCGGAGCTGCATATAGTCACAGTGGTAGTTTATTCGCACATCAGAAACGTTGTCGTGTCCAATATGGTGAAATGGTTACTGATGAACATCATCATGCTGTTGCTCATCATATTCATGTAAATAACGTACAATCTACAGTGAGATCGCTTACTGTGATAGGCCAGttgtattga
- Protein Sequence
- MNSNNCFNLSPNMERMCRICLTESNNLISIFCPNQEDDNYLGLAQKIQVCGSIDIHEQDGLPSLICENCIYKANIAHDFRQLCQHSNTRLRLYYNNPGKCNVMDSCTQTDLSPCIELPKQITNTQDNSFVKQEMQIVSNSQDFNNTNNTFTTNTPNLATTDIDMQDDKIFMSSIGFEGSTNKVIGKEECSIENNINQGSAIESASQIDTCDIYRMMDVDDKPQMEEHGINTKESDKHSNSKAEEEDDEDDEDDEMDEQQFSTERMSDDTGTEKEAPPQKRTSSRKTKSMANKTYSEDEGDDNYYDPSSDSQDSEELKFKCKICLKRYATQKGLKKHSLVHEKKHKCNICLKLFYKQENMEKHKKIHASKPHACQLCHACFSKSQSLIRHLKSHTEKVNDMIKQINTDERKDDENTKKEPKCEDDTEDESCVNVNEPDEFENAPELYKCEICDQYCSSLKNLKRHALIHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLAEDNKLFDSDDDAFPNDTTTTNTLPDNETIKKEDSEEDGSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHSGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPYVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEMVTDEHHHAVAHHIHVNNVQSTVRSLTVIGQLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513638;
- 90% Identity
- iTF_01232543;
- 80% Identity
- -