Basic Information

Insect: Polistes dominula
Gene Symbol: -
Assembly: GCA_001465965.1
Location: NW:679414-685893[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.5e-06 0.00057 19.3 1.2 1 23 146 168 146 168 0.97

2 15 0.0021 0.12 12.0 6.2 1 23 174 196 174 196 0.97

3 15 5.1e-05 0.0031 17.0 0.0 1 23 318 340 318 340 0.98

4 15 0.079 4.8 7.0 0.3 1 23 346 369 346 369 0.97

5 15 4e-05 0.0024 17.4 2.1 1 23 396 418 396 418 0.97

6 15 1.2 70 3.3 0.0 1 23 433 455 433 455 0.86

7 15 0.4 24 4.8 0.5 2 23 462 484 462 484 0.94

8 15 0.0013 0.076 12.6 2.6 2 19 492 509 492 513 0.95

9 15 7.2e-05 0.0043 16.6 3.6 1 23 519 541 519 541 0.96

10 15 0.0099 0.59 9.8 0.2 2 23 547 568 546 568 0.94

11 15 1.5e-06 8.7e-05 21.9 1.0 1 23 577 599 577 599 0.98

12 15 0.0029 0.18 11.5 0.4 3 23 607 627 605 627 0.97

13 15 0.0021 0.13 11.9 0.2 3 23 635 655 633 656 0.94

14 15 0.042 2.5 7.9 0.0 1 23 670 692 670 692 0.92

15 15 0.00077 0.046 13.3 0.0 1 20 1071 1090 1071 1093 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.5e-06	0.00057	19.3	1.2	1	23	146	168	146	168	0.97
2	15	0.0021	0.12	12.0	6.2	1	23	174	196	174	196	0.97
3	15	5.1e-05	0.0031	17.0	0.0	1	23	318	340	318	340	0.98
4	15	0.079	4.8	7.0	0.3	1	23	346	369	346	369	0.97
5	15	4e-05	0.0024	17.4	2.1	1	23	396	418	396	418	0.97
6	15	1.2	70	3.3	0.0	1	23	433	455	433	455	0.86
7	15	0.4	24	4.8	0.5	2	23	462	484	462	484	0.94
8	15	0.0013	0.076	12.6	2.6	2	19	492	509	492	513	0.95
9	15	7.2e-05	0.0043	16.6	3.6	1	23	519	541	519	541	0.96
10	15	0.0099	0.59	9.8	0.2	2	23	547	568	546	568	0.94
11	15	1.5e-06	8.7e-05	21.9	1.0	1	23	577	599	577	599	0.98
12	15	0.0029	0.18	11.5	0.4	3	23	607	627	605	627	0.97
13	15	0.0021	0.13	11.9	0.2	3	23	635	655	633	656	0.94
14	15	0.042	2.5	7.9	0.0	1	23	670	692	670	692	0.92
15	15	0.00077	0.046	13.3	0.0	1	20	1071	1090	1071	1093	0.94

Sequence Information

Coding Sequence: atggATGTTACTGGTGATTTAACTTTGCAATGGGTGGAAGAGGTAGGAAATGTGATTCACGAAGAAGTTATATGTGGTCTGGAAGCAGAACTGGTAGCaccagaagaagaagtaatagGAGCCTGTGAAGAAGTTACAGTAGAAGAAACAGGAGAATCCGTTTCCAATGTACCTCCAACGACAGAATCTGAAATCCTAATGGTTCCTCAGACTAATGATATGGACTCCATTTATATAGTACCACAAGATCAAGGTCATGATTATCTTAATATACAAGTCACAGAGGAAGTAATTGCAGATAATTGGGACAGATCTGGTCCAGATGATGGcGTTGAAATTCCAGAAACGAAAGTTTCTAGTGACAATCTATTAGAATATGATGACATGGAAATACCATTACCTACAGATCAAGATTCTTATACAAATATTCGTCCATATCCATGCGATTTTTGTAGTCGAAGATTCAGGAAAAAAGCAAATTTAATGAATCATATGGTATCACATCAAACTGATCGTCCTCATCATTGTAATTTATGTGGAGCTCGTTATGTACGAAAATGTGATCTtatgaatcatttaaaaactCATGCTTATGCACCATCTCGGGATGGCTTAGATGACGATTTAAATGATGACGACTCCTTAGCCCccgaggaagaagaaactaaTAAAGGTAGACGTAAGAAAGTACAATCCAATGCACCAAGAAAACGTAAAAACAATTCAACTATTCCAAAAAGAAgtgatgatataaaaattgaaatgaataaatatgttaataaatcttATGATTATGTGGACGAAGATATGCGCTTATTAGAAGAAATGACTAATCGAAATCCAGTTCGTGGTAATAATTATCCATCAAGTTCAAGATGGAATGAACAAATATCACCAGTACCTCATGAGCAGCAACCTCCACGGTGGCCTATTACAGATCCCACAAAACCATATGTTTGCCAATATTGTGGTGTAGGGTTTGCGAGAGAAAAAGCTCTTGCATCCCATGCTCGAGTTCATGGTGGTGATAGTCCATTTGAATGTACTTCTTGTAGTGAAATGTTCTGGGATGTTAATAGTTTAAAAGAACATGTTCGTATTAAACATGGAGGTACTACACAATTGGACATAGAAGATTATGATACCAATGATGCTACATACACAGGTGATGAGAGATTTGGAGAATTTTGTTGTAACACTTGTGGAGTTCCTTTTCAACGTCTAGATTTGCTTAAACGACATCAAAAGATTCATGTCAAACAAGAAATAGACATAATGGAAGGTTCAAGTCAGCATCACGTGTGCAATGTATGTGGTGAATGGTTTGAAGAAGCATTAGCTTTATTAGCGCATGCCGAACTTCATGCTAGATCTCCTAGTCGTAGATGCTTATTGTGTGGGCAGAGATGTCGTGACGATGCCGAAGTTGCAGAGCATGTTCGTCAGAACCACGCAGAAGATGCTCCACCAAATACATGTACGCTGTGTGGGAAAACATGTAAAGATAAACGCAGTTTAATCAAACACTCATGGGTACATAATGTTGATAAAACATTTGATTGTACAAAATGTGGAAAACAATTTCATAGCAAAGCTAGATTACGaagGCATATGGTTTCACATCGTAACAAAATGGTTCAATGTGAAGAATGTGGAGAAGAATTTCCTGATGGTAGAGCTCTTGTGAGTCATCgtcattttcataataaagaACTAGGTGGTCGTTCGTTTCCTTGTCACGAATGTGGAAAAACATTTGGAAGTCGTAGCTCTCAGCAAATACATATTCGTATTCACACAGGAGAAAGACCTTATGGTTGTAGGTTTTGTCGGAAAGCATTTGCAGATGGTGGCACATTGAGAAAACATGAGCGGATTCATACAGGCGAAAAACCGTATGGATGTGCTATCTGCCCTCGTGCATTTAATCAAAGAgTAGTTCTTAGAGAACATGTACGAGCTCATCATTCAGGTCCTGATCCAAAATGCGTTGGTAGTATTACACCATTTTTATGCAAAGTTTGTGGTGATGCTTTTGCAACATCAGAACAAATTGTTGCTCATATAGTTCAACACTGTGATGATAACACTGCACTAAAACGTCAACCACAGACCGGACCACGCAAATATAAAAGGAGACGTAAATTGAAGCCTCATGAAACAACTACAATGTtgagaattaatgaaaattatgataCACTTGAAGGTGGATCTGATTCAGATGATAATACAAAACGGAAACTTGgtaggaaaaataaacaacatagATCAAATGTCGAAGAAGGTTATCAAAATGTTCTTAAAAGTTTTGAGAGttctttacaaaatataaattcaatagtAACTAATTCTAAATTGAATCCtgcaaaatcaaaattatcgaagaaaaaattgaggaaagaagaaaaaaaaaatgaagggcAAACAACATGTCAATCAGGAAGACCTAAAATGATACACACTCAAAAAACAAGAGTACCTGTTGAAATGGGTAGTGATGGTGTTAAAAAAGGTCAAAAAACCAAAACGATGGTAACAAGAACTCCTAAAGTAATGCCAAGTGAACATAAACTGGGTATCTTCACTGGGGGAGAAAGGAATAGaccaagaacaaaaaatgttagtTATCATATTGAGGGAAAATTACAGTTAACACCTGCAACATTTCCAAAGCCAAAGGAAGAAGATGTAAAATTATCAACACAAGTACAGCCACCAATgctaacaaatataaaaatagagcCTGGTGTACAAAAATCTGTGGATAGTAATCATAGTAATAATCAtagtaatattgtaaaaataaacaatgataAATTAGATCGAACACCTAGAAAAAAGTCTActgtttttaagaaaataaagaaacaaaagcaaataaatataaaagaagaaccaaatgaaaatataaatgaaagtgaaacacaaaataataacaatacagAAAATACTAATTCTATACGGTTAATGGAGGAGCACACAGTAGATGGGGGTAGCCTAGAAGTTGCTTTTGAAGCTAACGTAGTTACAGCGGAAGAAGAAACCATTCTTCCTGATATTGATACAGTGactaataatgataatattgggAATGGAAATGTTCAACTTAGTGTAAAGGTAGAATCTACACCTCAAAGAATTATGGCTGTTCATAGTGTTATTACACCTGTGGATGAAGTCGCAGAAACTATAATACCAGATACTTTGGAATACACATGTGAAATGTGTTCTATGGTATTCTCCAGTCGTGCTGAGCTTTTGGTGCATGTACCAAtacatatttga
Protein Sequence: MDVTGDLTLQWVEEVGNVIHEEVICGLEAELVAPEEEVIGACEEVTVEETGESVSNVPPTTESEILMVPQTNDMDSIYIVPQDQGHDYLNIQVTEEVIADNWDRSGPDDGVEIPETKVSSDNLLEYDDMEIPLPTDQDSYTNIRPYPCDFCSRRFRKKANLMNHMVSHQTDRPHHCNLCGARYVRKCDLMNHLKTHAYAPSRDGLDDDLNDDDSLAPEEEETNKGRRKKVQSNAPRKRKNNSTIPKRSDDIKIEMNKYVNKSYDYVDEDMRLLEEMTNRNPVRGNNYPSSSRWNEQISPVPHEQQPPRWPITDPTKPYVCQYCGVGFAREKALASHARVHGGDSPFECTSCSEMFWDVNSLKEHVRIKHGGTTQLDIEDYDTNDATYTGDERFGEFCCNTCGVPFQRLDLLKRHQKIHVKQEIDIMEGSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGQRCRDDAEVAEHVRQNHAEDAPPNTCTLCGKTCKDKRSLIKHSWVHNVDKTFDCTKCGKQFHSKARLRRHMVSHRNKMVQCEECGEEFPDGRALVSHRHFHNKELGGRSFPCHECGKTFGSRSSQQIHIRIHTGERPYGCRFCRKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSITPFLCKVCGDAFATSEQIVAHIVQHCDDNTALKRQPQTGPRKYKRRRKLKPHETTTMLRINENYDTLEGGSDSDDNTKRKLGRKNKQHRSNVEEGYQNVLKSFESSLQNINSIVTNSKLNPAKSKLSKKKLRKEEKKNEGQTTCQSGRPKMIHTQKTRVPVEMGSDGVKKGQKTKTMVTRTPKVMPSEHKLGIFTGGERNRPRTKNVSYHIEGKLQLTPATFPKPKEEDVKLSTQVQPPMLTNIKIEPGVQKSVDSNHSNNHSNIVKINNDKLDRTPRKKSTVFKKIKKQKQINIKEEPNENINESETQNNNNTENTNSIRLMEEHTVDGGSLEVAFEANVVTAEEETILPDIDTVTNNDNIGNGNVQLSVKVESTPQRIMAVHSVITPVDEVAETIIPDTLEYTCEMCSMVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01424531;
90% Identity: iTF_01234507;
80% Identity: -