Pdom003267.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:1710581-1713795[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.2 4.9e+02 0.6 0.1 2 22 139 158 138 158 0.85 2 14 0.00016 0.0098 15.4 1.6 2 20 165 183 164 186 0.94 3 14 0.00015 0.0092 15.5 1.8 1 23 192 215 192 215 0.93 4 14 2.4e-06 0.00014 21.2 0.9 1 23 221 243 221 243 0.98 5 14 3.9e-05 0.0023 17.4 1.0 1 23 397 419 397 419 0.97 6 14 4.8e-05 0.0029 17.1 0.3 2 21 428 447 427 448 0.93 7 14 0.00023 0.014 15.0 2.6 1 20 470 489 470 492 0.92 8 14 0.0032 0.19 11.4 3.3 1 23 497 520 497 520 0.95 9 14 9.5e-07 5.7e-05 22.5 0.3 1 23 526 548 526 548 0.98 10 14 0.0015 0.088 12.4 4.6 1 23 555 577 555 577 0.98 11 14 0.00027 0.016 14.8 0.4 3 23 585 605 583 605 0.97 12 14 0.0003 0.018 14.6 0.2 1 23 611 634 611 634 0.96 13 14 0.37 22 4.9 0.1 1 23 648 670 648 670 0.93 14 14 0.0015 0.092 12.4 0.0 2 23 933 954 932 954 0.96
Sequence Information
- Coding Sequence
- atggtTACACTGACAGGACCTAACTTGACAAGACCTAACTTGATGGTAGTGAGGATGGAAGCTCatgaaaatgaacaatatgTTAACTTTCCACTATCTGGAGTGCATGATaatattcaagaaaatataatatctcacGAAGAGATATGTGAACCTGTTGATGATTGCGTACTCCAAGATAATTTAACAGAGGGTCCTGTTAATGATGTTAATACTGATATACAAGAAGGACATGTCGCTGTGGAAATCTTACCAGAGAGATCAGACGAAGAGGATGAAAACCGTAGCGTTTATCcaatatatatcaaacaagaggaacaacaacaatataCTTCTGGTGATGATGAATCAATGGCTGTGGAAGCGCTTCGTCAATTGGGTGGAATGTAtccatattttgaaaataaaaaagtcacTTGTCCCAATTGCGCCAATCTGTTTATGCAAAGTGAATTTGCTAAACATCAGTCTACGTGTAATGTCAGTAAGTTATCATGTACAACTTGTGGAGAaacatttgaaagaaaaatggatttaaataatcatatgGTTTGTCATCAAGTAGATCGACCACATGCATGTAGAACATGCGGTAATTTGTTTCGTTCCAAAAGCAATCTTCAATCGCATATGTTACAAGTTCATCAAATTGAAAGACCACATAAATGTACTATTTGTGGTGCTGATTTTCAAAGACCTTCTAGCTTATCTAATCATATGAAAATACATACTTATGTAGCTGGCCGTGCTATAATGCAATCGAGAGGTAATAACATACAACAGTCAGTGGAGACAACTAGAAAGTGGTCGGAAAATAATACGTCTGAATCACAAGCTGTCCCTGTACCATCCTCTACCGTTCaaattgttcaaaattataatacctGTCAAGTTCATTGGACTGTTCCTTCCTTTACTTTTCAAAACGAACAATCTAACGTTGCTACAATTTCTAATCATGATGAAAAAATGGATACATTGCACGAGTTTAATGTATTACCTAATGGTGAAGTAACACAATTCGAATATAATCAgccaaataatataaataatcaaatcaatCAGCAATATAATTTAGCTCCCAATGCATTCAATAATTCGGATGGTATGATCAAAGTTGAGGCACTTACGTATAACAatgaaagtagaagaaattACGTAGATATGGGAACAGATGTTAACAAACAACACACATGTAGTCATTGCGGTATTAGTTTTTCAAAAGCAGTGGCATTGGCATCTCATGAAAAGGTTCATACATCTAAAAACTGGATGCCTATTGAATGTGAATATTGCGATAAACAATTTCAAGATGCAAGTCATTTGGCAACTCATCAAACTACTTGCACCAAAAAAATGatgcaaaataatatagatcAAGGTGTATCAAATAGCAAATGGGGGAAACATGCTTGCTCGGAATGTGGGAAGAAATTTACAACCAAGCAGAAAATGTTTAGACATCAATGGATACATAGAAAGAAAACACATTGTTGCGAAGTTTGTGGAACACagtttgaaaaacaaaatcaattagATAAGCATAGATTATCTGCTCATCCTGGTGACTCGCCATTCACTTGTACAGAATGTGGAAAAAGTTTTGTATCACGTCAAGGTCTTTGGGAGCATGGCAGAACTCATGCTGGAAGTCCAGCGTATTTTCATTGCAATACCTGTTCAAAAACTTTCTCCTCTCGTCAAGgatatttaattcataatcGTACTCATACCGGCGAAAGACCATATGGTTGTAAATTTTGTTGGAAAGCATTTAGAGATGGTGGTACATTAAGAAAACACGAACGAATTCACACAGGAGAAAGGCCACATGTATGTCCTTTATGTTCAAGAGCTTTTAATCAGAAAGTAGTTCTTCGTGAACATGTTAGATGGGTACATGCTgcaggaaaaaatgaaaccgAAGTTACAGGACCGCCTTATCCATGTCCTTTGTGCGGTGCTTTGAATCAAGATCGTGATGAATTGTGCGCACACATTGTTAAACACTCTGATCAAATGATAGCCGAAGCTAaagcaaaaacaaataataatgctCCTAAATCACGACCTAcgagaaaaaaatctaaagcATCTTTAGTAGAAGGTgcacaaaagaaacaaaatatagatGATCATGAAATTTCAAgattagaacaaaataaagCTTTACTGTCTATTACTGAAGCAATGGATAAATCAGATTGTcaacaaattgtaaataataaacaaaataatacttatcTCGTAGTTACTGCAGAAAGGCATAGTGAAAACTTAATTACGATATCTGAACTTAAACATGATAATGTAAGATTAATATTAgacaacaaacaaaatgaaaatgttcatATTACACAAAATGATCAAGAACCTGCtgattcttatttaataactatggaaaaacaaaatgacacTGCGCATATTTTACAAGATAATGATGCTATTCATACGATAACTACAAATAGAAGCGATGAAGTTGATACAATGCATTTAATACAATCCTCCAAACAAAGTAATACcttacatttattatcaaagcCGAACCAATCACTTCCTGTTTTGACAATAACTAATAATCCTGAAGatcatgaaaattattctaGTCAAATTGCACAGATGGGTAATACCAATCTACCAATAGATATGGCTACGCATGATACATCTAGACAAGATCAGacattaaaaaatcataatcgCAATAGACAGGAATCGTTACTACACGAAGGAGTTTCTCAAGGAACAGTTAtagaaattgttaattatcaaCAAGATAGTGATGATGGAGAAGAATTAGTTTGTGGTATATGCGGGGAAGATTTTACtgataaaaacatattaatggAACACGTTAAAACTCATATGtaa
- Protein Sequence
- MVTLTGPNLTRPNLMVVRMEAHENEQYVNFPLSGVHDNIQENIISHEEICEPVDDCVLQDNLTEGPVNDVNTDIQEGHVAVEILPERSDEEDENRSVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPYFENKKVTCPNCANLFMQSEFAKHQSTCNVSKLSCTTCGETFERKMDLNNHMVCHQVDRPHACRTCGNLFRSKSNLQSHMLQVHQIERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSRGNNIQQSVETTRKWSENNTSESQAVPVPSSTVQIVQNYNTCQVHWTVPSFTFQNEQSNVATISNHDEKMDTLHEFNVLPNGEVTQFEYNQPNNINNQINQQYNLAPNAFNNSDGMIKVEALTYNNESRRNYVDMGTDVNKQHTCSHCGISFSKAVALASHEKVHTSKNWMPIECEYCDKQFQDASHLATHQTTCTKKMMQNNIDQGVSNSKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHCCEVCGTQFEKQNQLDKHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAYFHCNTCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKSRPTRKKSKASLVEGAQKKQNIDDHEISRLEQNKALLSITEAMDKSDCQQIVNNKQNNTYLVVTAERHSENLITISELKHDNVRLILDNKQNENVHITQNDQEPADSYLITMEKQNDTAHILQDNDAIHTITTNRSDEVDTMHLIQSSKQSNTLHLLSKPNQSLPVLTITNNPEDHENYSSQIAQMGNTNLPIDMATHDTSRQDQTLKNHNRNRQESLLHEGVSQGTVIEIVNYQQDSDDGEELVCGICGEDFTDKNILMEHVKTHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01512329;
- 90% Identity
- iTF_01513627;
- 80% Identity
- -