Basic Information

Insect: Polistes dominula
Gene Symbol: -
Assembly: GCA_001465965.1
Location: NW:1288181-1291844[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00018 0.011 15.3 3.9 1 23 230 252 230 252 0.98

2 11 0.28 17 5.3 11.7 2 23 259 280 258 280 0.91

3 11 4.1e-05 0.0024 17.3 6.6 1 23 286 308 286 308 0.99

4 11 0.00028 0.017 14.7 1.6 1 23 314 336 314 336 0.95

5 11 8.8e-07 5.3e-05 22.6 1.9 1 23 342 364 342 364 0.97

6 11 9.9e-06 0.0006 19.3 0.1 1 23 370 392 370 392 0.97

7 11 5.4e-05 0.0032 17.0 1.6 1 23 397 419 397 419 0.97

8 11 3.2e-05 0.0019 17.7 0.0 1 23 425 447 425 447 0.96

9 11 1.7e-05 0.001 18.5 0.2 2 23 459 480 458 480 0.96

10 11 1.1e-06 6.5e-05 22.3 2.0 1 23 546 568 546 568 0.97

11 11 1.8e-05 0.0011 18.5 4.6 1 23 578 600 578 600 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00018	0.011	15.3	3.9	1	23	230	252	230	252	0.98
2	11	0.28	17	5.3	11.7	2	23	259	280	258	280	0.91
3	11	4.1e-05	0.0024	17.3	6.6	1	23	286	308	286	308	0.99
4	11	0.00028	0.017	14.7	1.6	1	23	314	336	314	336	0.95
5	11	8.8e-07	5.3e-05	22.6	1.9	1	23	342	364	342	364	0.97
6	11	9.9e-06	0.0006	19.3	0.1	1	23	370	392	370	392	0.97
7	11	5.4e-05	0.0032	17.0	1.6	1	23	397	419	397	419	0.97
8	11	3.2e-05	0.0019	17.7	0.0	1	23	425	447	425	447	0.96
9	11	1.7e-05	0.001	18.5	0.2	2	23	459	480	458	480	0.96
10	11	1.1e-06	6.5e-05	22.3	2.0	1	23	546	568	546	568	0.97
11	11	1.8e-05	0.0011	18.5	4.6	1	23	578	600	578	600	0.97

Sequence Information

Coding Sequence: ATGTGTACAACCCCTGGCAACGCAGGCGCTGGATTCGGGTATGCCTGGTCCTTTGGAGGACCTGGTACTGAAACCCGAGAGAACGCACAGAGCGAACTTGCTACTAATATTAGTTACGCTGTCAATAACAATCAGGATCAAGGTTCCAGTCAGAAAATCCAAGTTGACATCAAGCCCACTAAAAACATTAATAGTTCTCATCGTAGACCTATGTTCGCTATGAATGAAAGTTGCCAACAAACTTCTACTACTCATCACGGTCACACTGGTGGAGCTCATAATCAAACGCATGGTTCTCATGTTCGCACTAAAAAGCACCACGACGTTTTCCCATTGAATTGTGAAAAAGGTGGTTGCCAGTGCGACGCTTCTcaaccaacaccaccaccttcTCTATTTTCAAATACATTAGTATTTACTACAGGTGACAAGCATGGCATGAGTAAGCATTTCATGACACCACTTGGACCTTTGCAACTTACTGCGGAAGAGTGCAATGAAATCTTAATGAAAAGAGCAGCAGCTGCTTCTAATCAAGCGAACGCCAATAACGTTGCTACCAGTCAGACTGATGGTACAGCTCATTTTGGACACGTCTTAACACATGTAAACACAACCCAAATTGAGACTAaagtaaaacaacaacaagacaTGGGCAGTCAAGTTCGTCCACCTAAAGAAAGACCATATTCTTGTTCTGAATGTGGTAAATCATTTTTGCTAAAGCATCATTTAACGACGCACGCGAGAGTACATACTGGAGAAAGGCCTCACATCTGCATTCACTGTGGCAAAAGTTTTGCTCACAAACATTGCCTTCATACTCACCTGCTCTTACACAGTTCAGAAAGACCTTATCAATGTCGAGAATGTAAAAAGTCCTTTACGTTAAAACATCATCTTGTAACGCATACTCGGGTACACACAAGAGAAAGACCATTTGTTTGCCAGGAATGTGGAAGAGCGTTTCCTCTTAAACGCCACTTAGTCACCCATAGTAAATTCCATTCTGGGGAGAGGCCATTTGTCTGTGAAGAATGTGGAGAGTCCTTTTCACAGAAAGATCATTTGACGATGCATTCGCGATTTCATGGCAGTTTACATCCATTTGTTTGTCCTGATTGTGGGGCTACATTTCAAAGGAAGTTTGAACTAGTTAACCATGGTCGGTTACATGGTAGAATTCCACACTCGTGTACTGTTTGTGGGAAAGAATTTTTACAGAAGAGAACGCTACTAGCTCATATGCGTTTACATACAGGAGAGACACCTTTTGCTTGCACCGTTTGCGGAGAAGCATTCCCAAGAAAAGTAGATTTAGTTACGCACTCCAAGATTCACAATAACAATACGAGTACAGATGAAAAGTCTCTAACATGCAGgGAGTGTGGACTAGAATTTTCTAACAGGGAAGCCTTGACATTACACTTAAGGCTGCACTCTGGTGACAGAACTTTAGTAACGGATTTATGTGGGTTAGCAGCTGCCTTCCAACAAACTCCTGGACACTTTTTAACTCCTAATACTCCTGGAACCCACCAGATGAATGGTCCGATTGGAGCTCCTGGTGTTAGCCATATGCATGGTGCAACGCAAACTTCGCCACCAGTTGGTACTGGTCCTAAACCAAAACCGCATATTTGTCCAGATTGTGGCCGTGGATTTGCTCAAAAGCATGGACTCTCTCAACATCAACGACGTCATACGGACGGCAGTTGTCATATAAGGTCACATGTTTGTGACAAGTGTGGAAAGGCTTTCTtccaaaaaaatcatttgttattaCATCAACGTCAGCACATGGATCCTCCACCGAGTATACTTCGGCAGCAGCAAAGACAAGCTGCACAGGCTGCTGCACAACAGGCACAACAACAGCAAgcacagcaacagcagcaagcGCAACAACAGgtacagcaacagcaacaacaagcgcaacaacagcaacaacaacagcagcagcaacaggtACAGCAACAACAGGCACAACAGgtacaacagcagcagcagcagcctcaacaacagcaacaacaaacgTGTACGGTCGATACCAAAACGATCCAGTTACAAGCAATACAGCAACAAGTTCAACAACAAGTACAACAACaggtacaacaacaacaacagcagcagcaacagcaacaagcGTGTTCCGTGGACACTAAAGCAATACAGTTGAATGTCACCATGTGA
Protein Sequence: MCTTPGNAGAGFGYAWSFGGPGTETRENAQSELATNISYAVNNNQDQGSSQKIQVDIKPTKNINSSHRRPMFAMNESCQQTSTTHHGHTGGAHNQTHGSHVRTKKHHDVFPLNCEKGGCQCDASQPTPPPSLFSNTLVFTTGDKHGMSKHFMTPLGPLQLTAEECNEILMKRAAAASNQANANNVATSQTDGTAHFGHVLTHVNTTQIETKVKQQQDMGSQVRPPKERPYSCSECGKSFLLKHHLTTHARVHTGERPHICIHCGKSFAHKHCLHTHLLLHSSERPYQCRECKKSFTLKHHLVTHTRVHTRERPFVCQECGRAFPLKRHLVTHSKFHSGERPFVCEECGESFSQKDHLTMHSRFHGSLHPFVCPDCGATFQRKFELVNHGRLHGRIPHSCTVCGKEFLQKRTLLAHMRLHTGETPFACTVCGEAFPRKVDLVTHSKIHNNNTSTDEKSLTCRECGLEFSNREALTLHLRLHSGDRTLVTDLCGLAAAFQQTPGHFLTPNTPGTHQMNGPIGAPGVSHMHGATQTSPPVGTGPKPKPHICPDCGRGFAQKHGLSQHQRRHTDGSCHIRSHVCDKCGKAFFQKNHLLLHQRQHMDPPPSILRQQQRQAAQAAAQQAQQQQAQQQQQAQQQVQQQQQQAQQQQQQQQQQQVQQQQAQQVQQQQQQPQQQQQQTCTVDTKTIQLQAIQQQVQQQVQQQVQQQQQQQQQQQACSVDTKAIQLNVTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01509061;
90% Identity: iTF_00684308;
80% Identity: -