Pdom008223.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- -
- Assembly
- GCA_001465965.1
- Location
- NW:54011-58739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.9 4.1e+02 0.9 0.1 2 11 64 73 63 80 0.76 2 14 4.2 2.5e+02 1.6 0.1 1 23 210 237 210 237 0.82 3 14 0.0082 0.49 10.1 0.2 1 23 242 264 242 264 0.95 4 14 4e-05 0.0024 17.4 1.2 1 23 272 294 272 294 0.98 5 14 4e-06 0.00024 20.5 0.2 2 23 302 323 301 323 0.97 6 14 8.3e-07 5e-05 22.7 1.3 1 23 329 351 329 351 0.97 7 14 0.00016 0.0098 15.4 1.6 3 23 360 380 358 380 0.98 8 14 2.5e-05 0.0015 18.0 1.6 1 23 386 408 386 408 0.92 9 14 4.1e-06 0.00025 20.5 0.1 1 23 414 436 414 436 0.98 10 14 4.1e-07 2.5e-05 23.6 1.2 1 23 442 465 442 465 0.96 11 14 7.6e-06 0.00046 19.6 0.8 1 23 471 494 471 494 0.96 12 14 7.1e-07 4.2e-05 22.9 2.4 1 23 500 522 500 522 0.99 13 14 5.3e-05 0.0032 17.0 0.4 1 23 528 550 528 550 0.94 14 14 0.00022 0.013 15.0 0.6 1 23 556 580 556 580 0.94
Sequence Information
- Coding Sequence
- ATGACTGCTGATTATGAAAGGGATATTTCTCATTGCTTAGTCTGCGATTATAAAGTTGGTACTTCTTCCAGAAGCagtatacgtatatttaatgaaacttCTGTTACTGCTTTTCAAAAGCCTCTTCTCGATACTATTACTACAGTTTTAGAAGTTAATCTTAATGAACAAACAGCACATTCATTGGttgtatgtaaaaaatgttataaattatttaatgagGTTGTTGAATTagaacataaattattacagaTAAAGCAAGATTTAAGTAgtaattatcaaaaaacaattaataaaataactgacTTAACGAAACATGATGaggaatataataatgatcatgattatataaataatctagAAAATCAAGCTATGGAAATTGAATtaaaggatgaagaagaaatttctgattcattaaattgcaaagaaaatgagaaagaatttGAAGTAGTCGAAGAGATgttggaagaaaataatgaaatagaagaatctgaaaatgtatttgttaatGTAGAAGCCATACTTGATGCGAACAATGAaccagaaaagaaaagttccAAAAAATCTAAATCTAATGTTAAAGAAGAAACTGTTCAAGAACAgatAGTCATGAGAGAAGGAgctttttatgtttgtttaatATGTTTTGGTCagcaagaaaaagtaatagctGATTcaaaaactattataaaacatatgaaAGAAATTCATGAAACACGTTTATATATTTGCGATGTATGTGGTGATgactttagaaaaagaaatcaattatcCCTTCACCTGGATGAACACGTTGCAACGGAGGAAGGTGATTTTCAATGTGAAGTATGCAACAgaatctttaataatttacgattatttaGAATCCATAAGAGAATTCATTATCCACAAGTAAAATCATGGCCTTGTGATACCTGTGGTAAAAGATACAGCTCCAGAAATCTTTTGGAAGAGCATATTAATACGCATACTGGAATACGTCCACATATTTGTGAAATTTGTGGCAAAGATTTTGCATCAAAGTATACGTACAAAGCTCACATTAAAACACATGAGGTAAGACCTCGACCATATGGGTGCTCGCaatgtaataaaacatttttgagCCAACAAAATTTGAATCAACATGAAAGAACTCATAATGGCGTTAAAGATCATGTTTGTCATCAATGTGGTAAGGCATTTGGTTCGCCACATAACTTAGAAGTACATAATGTTGTTCATACCGGATATAAGCCATATATATGCAGAATATGTGGGAAGGCATTTGCTAGGAAAGCAGAAATAAGAGATCATGAACGAACTCATACAGGAGAGAAACCTTATCAATGTGAATTTTGTGGAGCTACTTttagtcaAAGATCCAATTTGCAATCTCATAAACGTGCTACGCATTACAATGACAAAAGATACAAATGCAGCGAATGCGATAAAGGATTTAAGAGAAGAAGACTTCTTGATTATCACATAAAAGCAGCTCATACAGGTGAAAGAccatataaatgtaatatatgctCAGCAACTTTTGTTTATCctgaacattttaaaaaacatatgcGCATTCATACTGGCGAAAAACCATATTTATGTGAAgtATGTGGAAAAGCATTCAATAGTAGAGATAATAGGAACGCACATAGATTCATACATAGTGACAAAAAGCCTTATGAATGTTTACATTGCGGTGCAGGCTTTATGAGAAAGCCTTTATTGTATACTCATATGCAAACTCAGgGACACTTAAACGATACAATTGTTGTTAATCAACCACGTTTAACCACGGAAGATGAGCAAGTAATAACAATTCCAGAAAATAATGCAGAATTGTTAATGGACGACTGTACAAACAATcagattgAAGAGACTGCGTTGTATGTTACTGATTTAAAAGACCACGTTATCATACAACAAGatgataatcaaatatataatgaagAAGGTGTTTTAAATATACCTGTAGAAGAGAATGTTGTAGGAGAAGAAGTTGATCAAATAACGGTAGATGAAcagatggaTTTCACTGAAAGAGATACTATAGTAGAATGTCAGAACGATGAAACAAATCAAGTTGAAGAAGTATACACTTACAACGACAGTGAAGAAGGAGAAACAGCTGTTCCCCATCCTgcagaatataaagaaattgtggaagaagaaaaacattctGCTGTAAGATTggttcaaattaaatttccaTCGTCGGTATCCGAAGAAGGTAGACGTTGGCTGAGCTTAGtacaaaatacataa
- Protein Sequence
- MTADYERDISHCLVCDYKVGTSSRSSIRIFNETSVTAFQKPLLDTITTVLEVNLNEQTAHSLVVCKKCYKLFNEVVELEHKLLQIKQDLSSNYQKTINKITDLTKHDEEYNNDHDYINNLENQAMEIELKDEEEISDSLNCKENEKEFEVVEEMLEENNEIEESENVFVNVEAILDANNEPEKKSSKKSKSNVKEETVQEQIVMREGAFYVCLICFGQQEKVIADSKTIIKHMKEIHETRLYICDVCGDDFRKRNQLSLHLDEHVATEEGDFQCEVCNRIFNNLRLFRIHKRIHYPQVKSWPCDTCGKRYSSRNLLEEHINTHTGIRPHICEICGKDFASKYTYKAHIKTHEVRPRPYGCSQCNKTFLSQQNLNQHERTHNGVKDHVCHQCGKAFGSPHNLEVHNVVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCSECDKGFKRRRLLDYHIKAAHTGERPYKCNICSATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLHCGAGFMRKPLLYTHMQTQGHLNDTIVVNQPRLTTEDEQVITIPENNAELLMDDCTNNQIEETALYVTDLKDHVIIQQDDNQIYNEEGVLNIPVEENVVGEEVDQITVDEQMDFTERDTIVECQNDETNQVEEVYTYNDSEEGETAVPHPAEYKEIVEEEKHSAVRLVQIKFPSSVSEEGRRWLSLVQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513618; iTF_01512961; iTF_01234498; iTF_01235176; iTF_01514954; iTF_01233807; iTF_01232532; iTF_01514298; iTF_01512319; iTF_01090136;
- 90% Identity
- -
- 80% Identity
- -