Basic Information

Insect: Polistes dominula
Gene Symbol: su(Hw)
Assembly: GCA_001465965.1
Location: NW:275310-279982[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0012 0.071 12.7 0.2 1 20 61 80 61 82 0.95

2 13 2.4e-06 0.00014 21.2 0.6 1 23 165 188 165 188 0.97

3 13 1.6e-05 0.00094 18.6 2.4 1 23 194 217 194 217 0.97

4 13 2.2e-05 0.0013 18.2 3.6 1 21 223 243 223 244 0.95

5 13 2.6e-08 1.5e-06 27.4 1.5 1 23 255 277 255 277 0.97

6 13 0.00052 0.031 13.8 0.9 2 23 287 308 286 308 0.96

7 13 0.00066 0.04 13.5 0.9 2 23 315 336 314 336 0.97

8 13 4.1e-06 0.00024 20.5 4.4 1 23 342 364 342 364 0.99

9 13 3.9e-06 0.00023 20.6 1.8 1 23 370 392 370 392 0.94

10 13 7.7e-06 0.00046 19.6 0.9 1 23 398 421 398 421 0.94

11 13 2.5e-06 0.00015 21.2 0.7 1 23 427 449 427 449 0.97

12 13 3.2e-07 1.9e-05 24.0 1.0 1 23 455 477 455 477 0.99

13 13 4.5e-05 0.0027 17.2 1.5 2 23 484 506 483 506 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0012	0.071	12.7	0.2	1	20	61	80	61	82	0.95
2	13	2.4e-06	0.00014	21.2	0.6	1	23	165	188	165	188	0.97
3	13	1.6e-05	0.00094	18.6	2.4	1	23	194	217	194	217	0.97
4	13	2.2e-05	0.0013	18.2	3.6	1	21	223	243	223	244	0.95
5	13	2.6e-08	1.5e-06	27.4	1.5	1	23	255	277	255	277	0.97
6	13	0.00052	0.031	13.8	0.9	2	23	287	308	286	308	0.96
7	13	0.00066	0.04	13.5	0.9	2	23	315	336	314	336	0.97
8	13	4.1e-06	0.00024	20.5	4.4	1	23	342	364	342	364	0.99
9	13	3.9e-06	0.00023	20.6	1.8	1	23	370	392	370	392	0.94
10	13	7.7e-06	0.00046	19.6	0.9	1	23	398	421	398	421	0.94
11	13	2.5e-06	0.00015	21.2	0.7	1	23	427	449	427	449	0.97
12	13	3.2e-07	1.9e-05	24.0	1.0	1	23	455	477	455	477	0.99
13	13	4.5e-05	0.0027	17.2	1.5	2	23	484	506	483	506	0.94

Sequence Information

Coding Sequence: ATGGAGGAAATTATAGaaaTTGTTAAAGTTGAGGAAGAAATAGTGTTGACCGATGATACTCCTCAAATCATAAttgACACAGATGAAACTGAGAAAGAAGTTGTAATAACTACAGAAGATGAATCTGGTAATGTGACAGCTATTTCCCAAAGTAGCcagattatacaaattataacagATTATGAATGTGTAACATGTCATCGCGTTTTCCAATCAGAAGATATGCTAAAGGAACATTTAGATGTCTGCAGAGAAGAAGATGATTCTACAAGTATATTAAGAAATCAAGATAATTATGATTCTGAGGATGAAGatgatgctgatgctgatgctgatgctgatgatccagattataaattcaatgatacaaatattgaagaagatACTAAAGctcaaaagaataataatgaaaaaccaACGATCAAACCTGTGCCAGATACACAATGCCACTGTTGTGCTGAAGACTTAAAAACTGCCCATAGCGGTGGTGAATTTAAATGTACAGAATgtgaattatcatttaaaaaaaaatcatctttaGATAGACACATAATAGTAATACATTGGAAATGTGAATCTTATGTCTGTAATGACTGTGAGTCAACTTTTCgtgataaaaaatcattaaataaacatcGTTATACTACGCATGTCAATCGCAACATATACAAaTGTGATACTTGTGACACATATTTTTCACGTAATTACCACTTGAAACGTCATAAAATGCAATCTGGTTGTCATGGAGAAATACGTAAAACTTTTGATTGTCAAGTTTGTCAAAAAGTTTTCACACGAAAGGATAATCTACGCGAACATTTGCGCACACATGCTGGAGCACCTCAAAGACAGAAAAAACCATGTAAATATTGTTCTAAGGAATTCTTTACTACTCAACAATTGATAATACACGAACGATTACATACTGGAGAAAGACCAGTACAATGTGATTTGTGTACGAagacatttttatcttctcttgcattaaaaaaacatcGTCGTGTACATACAGGAGAGAAACCATTTGAATGCAAATATTGTCACAGAAAATTTGCTGCCCGTGAGACATTAAATCGTCATCAAAGAACGCATACTGGAGAGAAACCTCATGTTTGTCAATATTGTGgaaaatcatttattcaaGCAGCACAATTAAGAGCACACGTATTTCATCATACCGGTGAAAATGgattttattgtgatatttgtgGTAAAGCATTTAATAGAAAAGCTCGCTTGAATgtacataaaaaatttgtacacGAAGGTGCAACACCATTTACATGTGAGATATGTGAGAAAGGCTTCACCCGAAGAGAAGACTTATCAAAGCATACATTGTTGCATACAGGAATTAAACCATTTAAATGTGATAAGTGCTCGAAGGCCTTTTCTGCTAAATCTTCATTACAAGCACATCTCAATACTCATAGACGAGAGCCACCTCAATCGTGCGTTGAATGTAATCGTGTTTTTATAAGACAAGACTGTTTGATGAGACACGTTCGAGCTAAACATAGAGAACTTCTGGAAGATGTAATGGACGAAGTggaaagaaaacatttacaagcacaattattcaatattgcTTCCATTGCTGCAGAAAAAACTAAATCAGGAGAATCTAAAGTACTTTCTACggatgaattattaaaagccATTTCAGATCTATTAAGGATACTTATTGATGAAGAAACCTTACAgTTATTTGGTTGGCCTATTGCTCCTATTCAAGATATTTTAGAGGCTGTAATTAGACGTTGTGGTCATGAACCTCTAACATCAGATAGTAATTTACTTTTCAATGAAAGGTTAAGAGCTAACGTTAAGCTCTTATTTACAGTCGTTATAGAGGATGAAACAGCCAAGTCATTATTAACTACCAAAACGGTAGACCATGTTATTCTTCATGTTTTGGAAatttcacaaaaataa
Protein Sequence: MEEIIEIVKVEEEIVLTDDTPQIIIDTDETEKEVVITTEDESGNVTAISQSSQIIQIITDYECVTCHRVFQSEDMLKEHLDVCREEDDSTSILRNQDNYDSEDEDDADADADADDPDYKFNDTNIEEDTKAQKNNNEKPTIKPVPDTQCHCCAEDLKTAHSGGEFKCTECELSFKKKSSLDRHIIVIHWKCESYVCNDCESTFRDKKSLNKHRYTTHVNRNIYKCDTCDTYFSRNYHLKRHKMQSGCHGEIRKTFDCQVCQKVFTRKDNLREHLRTHAGAPQRQKKPCKYCSKEFFTTQQLIIHERLHTGERPVQCDLCTKTFLSSLALKKHRRVHTGEKPFECKYCHRKFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFYCDICGKAFNRKARLNVHKKFVHEGATPFTCEICEKGFTRREDLSKHTLLHTGIKPFKCDKCSKAFSAKSSLQAHLNTHRREPPQSCVECNRVFIRQDCLMRHVRAKHRELLEDVMDEVERKHLQAQLFNIASIAAEKTKSGESKVLSTDELLKAISDLLRILIDEETLQLFGWPIAPIQDILEAVIRRCGHEPLTSDSNLLFNERLRANVKLLFTVVIEDETAKSLLTTKTVDHVILHVLEISQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01513619;
90% Identity: iTF_01233804;
80% Identity: -