Basic Information

Insect: Polistes dominula
Gene Symbol: -
Assembly: GCA_001465965.1
Location: NW:639490-658323[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.2e-05 0.0019 17.7 1.4 1 23 394 416 394 416 0.96

2 17 1.1e-05 0.00068 19.1 2.5 1 20 422 441 422 444 0.94

3 17 8e-06 0.00048 19.6 1.4 1 23 450 472 450 472 0.98

4 17 4.6e-05 0.0028 17.2 4.4 1 21 478 498 478 500 0.95

5 17 6.3e-06 0.00037 19.9 5.6 1 23 506 528 506 528 0.99

6 17 4.1e-05 0.0025 17.3 7.9 1 23 534 556 534 556 0.97

7 17 5.3e-08 3.2e-06 26.4 2.7 1 23 562 584 562 584 0.98

8 17 3.9e-05 0.0023 17.4 6.7 1 23 590 612 590 612 0.97

9 17 1.2e-05 0.00073 19.0 5.8 1 23 618 640 618 640 0.98

10 17 3.2e-07 1.9e-05 23.9 2.9 1 23 646 668 646 668 0.98

11 17 4.8e-06 0.00029 20.3 7.8 1 23 674 696 674 696 0.98

12 17 1.5e-05 0.00091 18.7 9.1 1 23 702 724 702 724 0.98

13 17 2e-05 0.0012 18.3 7.5 1 23 730 752 730 752 0.98

14 17 0.00095 0.057 13.0 8.8 1 21 758 778 758 780 0.94

15 17 7.3e-06 0.00044 19.7 0.4 1 23 786 808 786 808 0.98

16 17 0.017 1 9.1 4.5 1 23 818 840 818 840 0.98

17 17 2.8e-07 1.7e-05 24.1 1.3 1 23 846 868 846 868 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.2e-05	0.0019	17.7	1.4	1	23	394	416	394	416	0.96
2	17	1.1e-05	0.00068	19.1	2.5	1	20	422	441	422	444	0.94
3	17	8e-06	0.00048	19.6	1.4	1	23	450	472	450	472	0.98
4	17	4.6e-05	0.0028	17.2	4.4	1	21	478	498	478	500	0.95
5	17	6.3e-06	0.00037	19.9	5.6	1	23	506	528	506	528	0.99
6	17	4.1e-05	0.0025	17.3	7.9	1	23	534	556	534	556	0.97
7	17	5.3e-08	3.2e-06	26.4	2.7	1	23	562	584	562	584	0.98
8	17	3.9e-05	0.0023	17.4	6.7	1	23	590	612	590	612	0.97
9	17	1.2e-05	0.00073	19.0	5.8	1	23	618	640	618	640	0.98
10	17	3.2e-07	1.9e-05	23.9	2.9	1	23	646	668	646	668	0.98
11	17	4.8e-06	0.00029	20.3	7.8	1	23	674	696	674	696	0.98
12	17	1.5e-05	0.00091	18.7	9.1	1	23	702	724	702	724	0.98
13	17	2e-05	0.0012	18.3	7.5	1	23	730	752	730	752	0.98
14	17	0.00095	0.057	13.0	8.8	1	21	758	778	758	780	0.94
15	17	7.3e-06	0.00044	19.7	0.4	1	23	786	808	786	808	0.98
16	17	0.017	1	9.1	4.5	1	23	818	840	818	840	0.98
17	17	2.8e-07	1.7e-05	24.1	1.3	1	23	846	868	846	868	0.97

Sequence Information

Coding Sequence: ATGAACAGCGAGCAGCATGCATTGCCAGCGACAACGCAGGCTCAACAAGAgGATGTAAATGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTTCGACTGGCCTTGGCAATGTGGGGAATACTCCTCAAGCATCCACAGACCTGCGTGTCTCAGTCTACCACCATTCCCACCACAACTCCTCTCATAGGAGCGGTGGAAGTGGGGAGGCATCTTCCAAAGAACCAGCCTCTACGTTGAATCAGGAAATGGCATTGAACTCCAGCTCTCATCATCAATCAACTTCTCAGTCGgctcatcatcaccatcaaccTTCAGTTAGCAGTAGCAACCATCATGGCTCTATGCAGTCCAACTCTCAGATTCCAGTTTCTCTTCCTGGCCTTAATCTAGACGCGCATATCCCGACGAGCGTTAGTCACTTGCAGGCAGCACACGCGCAAATGCAACAACAAATGCAGGCTCAACAGCAGCAGCtgcaccagcagcagcagccacagcagcagcaacaacagcagcagcaatctCATCACCAAATGCAGAATCATCAAAATGCACAGAACAATGGACCGACCTCACATAACCAGAACGCCCAAAGGGATGACAACAAAGTCAAGGACGAAGGTGGCAGCTGTATCACCGAACGCTGTAGCGATAATCAGcagcagcaacaacagcagcagcagattGGCGTGAATATAAGCGGGAATTCATCGACGGAGGGTAGCAGCCAAAATAATTCAGAAAAACcggaaaaggagaaggagtTGCGGCAGCTGAATATGACGCAattTCAAGTTCCAGACTTAAAACCAGGCGGTCATATGATGGACGTAAGAACAGCCGATGGTTCAGTGGTCAAAATAAGTGCGGGAAATGAACAAGACTTAGCTAAAACACTGGGTGTTGAAATGGTACAAAACATGTACAAgGTCAATGTCGAAGATATTAACCAGCTTTTAGCGTATCACGAAGTTTTTGGCAAATTGCAAAGTGAAATTGCGGCCGGTACTACTTTGGTAGGTAGTACGGTTCCTACGCAAACAGTTACCACGATTCAAAATGGTACACCAATAGTACAGCAAGTTCAGTTGAATAAGTTTGACATAAAGACTAGCGATGGTGAAGCTACGCCGGGTCCAAGTGCATCGCCAGTTTCGGTCGGCAGTCATGCTTGTGAGATATGTGGAAAGATATTCCAGTTTCGTTACCAGCTTATAGTACATCGTAGATATCACACAGAAAGAAAACCATTTACATGTCAGGTATGCGGGAAGGCATTTTCAAACTCTAACGATCTAACGCGTCACGGAAAGTGTCACTTGGGTGGATCGATGTTTACGTGCACTGTATGTTTTCACGTCTTCGCGAATGCACCTTCGTTGGAACGGCATATGAAAAGACATGCTACTGACAAGCCTTACAACTGTACGGTGTGTGGCAAGAGTTTCGCAAGAAAAGAGCATTTAGATAATCACACCCGATGCCATACAGGCGAAACACCATACAgGTGCCAATATTGCTCGAAGACATTTACCCGAAAAGAACACATGGTAAATCACGTGCGCAAACACACTGGAGAAACCCCCCATCATTGTCAATCCTGTGGCAAGAAGTATACGCGCAAAGAGCATCTCGCTAACCACATGCGTTCACACACCAATGACACCCCATTCCGCTGTGAGATATGcgGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGTGAGACGCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACTCGAAAGGAGCATCTTCTCAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAGGATCATCTGGTAAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAATCGCCACATAGATGCCACTTCTGCTCGAAATCATTTACTCGTAAGGAACACTTGACGAATCATGTACGAATCCACACTGGCGAATCTCCGCACAGATGTGAATTCTGTCAGAGAACGTTCACCAGGAAAGAACATCTCAATAATCATCTCCGTCAACATACTGGAGATTCTTCTCACTGTTGTAATGTCTGCTCTAAACCATTTACGAGAAAGGAACATCTCGTAAATCATATGCGCTGTCATACTGGTGAACGTCCATTCGTATGCACGGAATGTGGCAAAAGTTTCCCATTGAAGGGTAATTTGCTCTTCCACATGCGCTCGCATAACAAAGGAAGCAACGCCGAGAGACCATTCCGTTGCGATCTCTGTCCCAAGGACTTCATGTGTAAAGGACACTTGGTCTCCCACAGACGATCCCATTCGGACGAACGTCCACACAGCTGTCCAGATTGCGGCAAGACGTTCgtcgaaaaaggaaatatgttGAGACATTTACGAAAACATGCATCTGAAGGTCCACCAACGCAAGTTAGCACGCCTTCTGCTATTCCACAATCTGGAGTTTTACCAATACCAACCGCTGCAGTTTTAGTTGGACATCAATTAGCACCACCAGCTCCACCAGTTGTTCCACAACATACCGTAGTTGTACCAACGCCACCCGGAGTTCTAGCATCCTATTAA
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATSTGLGNVGNTPQASTDLRVSVYHHSHHNSSHRSGGSGEASSKEPASTLNQEMALNSSSHHQSTSQSAHHHHQPSVSSSNHHGSMQSNSQIPVSLPGLNLDAHIPTSVSHLQAAHAQMQQQMQAQQQQLHQQQQPQQQQQQQQQSHHQMQNHQNAQNNGPTSHNQNAQRDDNKVKDEGGSCITERCSDNQQQQQQQQQIGVNISGNSSTEGSSQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNSNDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHHCQSCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHASEGPPTQVSTPSAIPQSGVLPIPTAAVLVGHQLAPPAPPVVPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00899003;
80% Identity: -