Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2.9e-12 3.1e-09 35.5 0.0 1 42 11 52 11 55 0.91

2 2 3.2 3.4e+03 -3.0 0.0 16 22 127 133 124 133 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2.9e-12	3.1e-09	35.5	0.0	1	42	11	52	11	55	0.91
2	2	3.2	3.4e+03	-3.0	0.0	16	22	127	133	124	133	0.81

Coding Sequence: atgagtttcttatcgcgaaactCGGCTTGGAGCGAAGAAGACCTTCAATCTGCTAAAGCTGCGATCGAAGAAGGGATGTCTAAAAGAAAAGCCGCAAAACAATTTAACATACCATTTACTACTTTGAGAGATCgactaaaaaatgaaaatatgagtAATCCAAGACTAGGTCGTAAGCCTATTTTCACACCACAGCAAGAAAATGACATTGCTGAACAAGTTAAGTTGCTGGGTTCGCTATACTATGGACTCAGTGTCACAGATTTGCGTAAACACGTTTATAAATATGCTGTGCTCaacaatatcaaaaataattttgatcgaAGCAGCAGAACAGCTGGATTGGATTGGGTACACGGTTTTATGAGACGCAACCCTTCAGTTTCTGTACGCAAAGCTGAAGTAACTAGCTTAAATAGGGTTTCTGCTTTcaacaaaaaggaaataacgCATTTCTACGACAAACTTGGTGagttaatagaaaaacataAGTTCCTTCCAAACAACATTTACAATGCAAACGAGACTGGTATCACCAAGGTGACAGACCCAGGAAAGGTGCTGGccaaaaaagacaaaaaagagtCGGATCTGTTACAAGTGGCGAACAAGGAAGCAATATAA
Protein Sequence: MSFLSRNSAWSEEDLQSAKAAIEEGMSKRKAAKQFNIPFTTLRDRLKNENMSNPRLGRKPIFTPQQENDIAEQVKLLGSLYYGLSVTDLRKHVYKYAVLNNIKNNFDRSSRTAGLDWVHGFMRRNPSVSVRKAEVTSLNRVSAFNKKEITHFYDKLGELIEKHKFLPNNIYNANETGITKVTDPGKVLAKKDKKESDLLQVANKEAI

Sequence clustering based on sequence similarity using MMseqs2