Pdom007374.1
Basic Information
- Insect
- Polistes dominula
- Gene Symbol
- HTR2C_1
- Assembly
- GCA_001465965.1
- Location
- NW:927005-1061046[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-07 0.00015 20.5 0.0 2 39 7 43 6 49 0.85 2 4 6.1e-12 6.4e-09 34.5 0.0 4 39 59 93 57 99 0.91 3 4 0.1 1.1e+02 1.8 0.0 21 34 127 140 113 145 0.80 4 4 4.6e-13 4.8e-10 38.1 0.1 4 39 171 206 168 211 0.93
Sequence Information
- Coding Sequence
- ATGAAAAGAGAATACAGCGACGATATGTTAGCATCGGCTATTAATGATTTAAGGCTTGGTCAAACTTTAATAGAAGCAGCTACCAAACATAACATACCTCGTTCTACATTATACATGCGTGCTAAAGGATTGGGTATACATTTAAATGCATCTAGGAATGAATATCCTGCCGAATGTATGCAAGCGGCAATAGATACTGTAATCGctGGTACTAGTCTACAACAAGCATCAGAAATATTCAGTATTCCTAAAACTGTATTATGGAGACGCATACAAAAACAAGGTTATCAAATTTTACGTTCTGAAATGAAAAGATCTTATGGATCAGATAAACGTGAAGCAGCTGTTAAGGCTttagaaagaggagaaaattTAACTAAAGTTGCTCTTGAATTTCAgataCCTAAGACAACATTATTTAGAGATAAAGCGAGATTAGTAGACGAAGGAAAATTGCCACTTTCATTTTGGAAAAAACGTAAGACAGAAAATGAGGAATTAAAAAAGTCGAGATTAGAAGAAGCGGTAGCTGCTTGTAAAGGAGGAAAAATGTCTCAAGCGGCAGCATCCATGGCTTATGATATACCAAAGACTACGATATGGAGACGTTTGCAACAAGATAGTAAAAAGTCGGAaagattaacaaataaaaaaaaatcacagaGGAGTATTGAGACAACATCGAGCATAGTTGATAAACCAAAGCAAGAAGCATCCGATTATACGTATTGCGAggtCGCGTCAGAAATTCCGATAACATATATAGATGAAAATAGTTTACCAGAGGAttctgttattattttaacgacaGAGGATATGGATGGTCTTAATTTAGAAGAAGGAAgacaaataattgtaaattctGTATCAAGTCATGAATATGTTCCATGTAATctaaatatagaagaaaattctaaTTACACACAACCAGAAAAAGTTGTCAAAGATGTCCAAATGGGAAAATTCATTACGAGCATTGGCTTAAACTGGGTGTATTATGAAGGTTATTTTCCATTACCTGCAGTCTACTGTCTTGCTTGGATTAGCCTGGACGTACTTTTTTGTACGGCAAGTATAATGCATCTGTGCACCATAAGTGTCGACCGTTATCTCAGCCTACGTTATCCCATGAAATTTGGTCGGAATAAAACGAGAAGAAGAGTaatcttgaaaataatctttgtCTGGTTACTCAGCATCGCCATGAGTTTACCTCTCAGTTTAATGTATTCTAAGGATCACAATTCCGTATTGGTCGACGGTGCCTGTCAAATCCCAGATCCTTTGTATAAGCTGATTGGTAGCATAATCTGCTTCTACATACCACTGGGTGTAATGCTACTCACATATGCATTGACGGTGAGACTATTGGCTAAACAGAGACAGAATATTGGTGGAGGTACAGGTTGGTCATCAGGATGGTTGGGTGGTCCACAAGGTGCATCCACGGGAGGTCTGGAGAGGCGTGGAACGTGGAAGAGATTTCTACTGAATAAAAATTCAGCCGGAAGTGGTGGTACTCCTCAGCATACTTCTGGTACATCTACCGACACAGAACTCACAACCCTCGACACTCACGAATTATGGCTTCCTGAAAGCGACCCGCCACCATCGGCGATGTCAGCACTTCACGCTTTCGGTGctgaaatgttaaaattatctAGAGGATTGGAAGGTGGTATTCAACAActacagcaacagcaacaacagcaacaaaaacaacgacagcaacaacaacaccataaacataatcatcatcatcatcatcatcaccatcatcatcatcatcatcatcatcattatcatcatcatcagctTAATCAGCAACAACATCGGTCCAGCTTTCGAAACGGCAGTGGGGATAGCGGAGGAAGTAGTGGATCGGGTTCAAGGACGAGTTTATCAATGGGTCAGGATGATTTAAGTTCACCGATTCCTTGGAAACATAGGCGTAGAGCATCAACTTATAATGAGGCACACCTTCAACGAGCTGATTCGATCTCACCTAAGATGCCTCGGAAAAGATCATTCAGTTTTAACGAGCAAACGACGTTTAGACGATCCTCCTCGTCAAGGAAAAGCTCGGCGAACGACGATAACCCCAAATCGAGGAAATCTTCAGACAAATCGGATAATGAAATAACGACAATACTTTTGCCACCACTTTGCACTTGTCCATATTTCGGTGAATCTTCTAAAAAACAAACCCCACAACCTACCGAAGTTGTAATCGTATCGAACGACACCATGAAACCTATTTCTGAAAGAACACTCGAGGTGAATCTTCTTGGTAGAAAGAATAGTGCGAGAATCAACGAAATAATACCAATTAATTCGGTTGTTACTTGGAGGGGTGGAAGACGTGGTTCTAGTTTAgGTAGCACAAGGACTCAATTGGCGTGTTCCAGATCAACTCCATTAAAACGAGCTGCAACAATGCGCGCGCGCAACggcacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaNacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaataa
- Protein Sequence
- MKREYSDDMLASAINDLRLGQTLIEAATKHNIPRSTLYMRAKGLGIHLNASRNEYPAECMQAAIDTVIAGTSLQQASEIFSIPKTVLWRRIQKQGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFQIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKKSRLEEAVAACKGGKMSQAAASMAYDIPKTTIWRRLQQDSKKSERLTNKKKSQRSIETTSSIVDKPKQEASDYTYCEVASEIPITYIDENSLPEDSVIILTTEDMDGLNLEEGRQIIVNSVSSHEYVPCNLNIEENSNYTQPEKVVKDVQMGKFITSIGLNWVYYEGYFPLPAVYCLAWISLDVLFCTASIMHLCTISVDRYLSLRYPMKFGRNKTRRRVILKIIFVWLLSIAMSLPLSLMYSKDHNSVLVDGACQIPDPLYKLIGSIICFYIPLGVMLLTYALTVRLLAKQRQNIGGGTGWSSGWLGGPQGASTGGLERRGTWKRFLLNKNSAGSGGTPQHTSGTSTDTELTTLDTHELWLPESDPPPSAMSALHAFGAEMLKLSRGLEGGIQQLQQQQQQQQKQRQQQQHHKHNHHHHHHHHHHHHHHHHYHHHQLNQQQHRSSFRNGSGDSGGSSGSGSRTSLSMGQDDLSSPIPWKHRRRASTYNEAHLQRADSISPKMPRKRSFSFNEQTTFRRSSSSRKSSANDDNPKSRKSSDKSDNEITTILLPPLCTCPYFGESSKKQTPQPTEVVIVSNDTMKPISERTLEVNLLGRKNSARINEIIPINSVVTWRGGRRGSSLGSTRTQLACSRSTPLKRAATMRARNGTTTTTTTTTTTTTTTTTTTTTTTTTXQQQQQQQQQQQQQQQQQQQQQQQQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -