Basic Information

Insect: Polistes canadensis
Gene Symbol: stc
Assembly: GCA_001313835.1
Location: NW:18801-24385[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2 9.2e+03 -4.3 1.6 15 19 492 496 491 496 0.81

2 13 0.08 3.7e+02 0.4 0.4 4 10 525 531 524 531 0.95

3 13 4.7e-06 0.022 13.9 12.7 4 18 542 556 540 557 0.95

4 13 6.6e-08 0.0003 19.8 17.7 1 18 593 610 593 611 0.98

5 13 2.3e-07 0.0011 18.1 14.1 1 18 649 666 649 667 0.98

6 13 0.71 3.3e+03 -2.7 0.6 5 10 696 701 696 701 0.95

7 13 5.3e-06 0.025 13.7 13.2 4 18 714 728 707 729 0.86

8 13 1.5 7e+03 -3.7 2.0 5 10 758 763 758 763 0.93

9 13 0.014 66 2.7 11.4 1 11 769 779 769 791 0.88

10 13 4.5e-10 2.1e-06 26.7 15.1 1 19 796 814 796 814 0.98

11 13 2 9.2e+03 -4.7 8.3 10 19 861 871 853 871 0.83

12 13 7.9e-06 0.037 13.2 15.3 1 16 907 922 907 933 0.87

13 13 2.9e-06 0.014 14.5 12.3 1 19 939 958 939 958 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2	9.2e+03	-4.3	1.6	15	19	492	496	491	496	0.81
2	13	0.08	3.7e+02	0.4	0.4	4	10	525	531	524	531	0.95
3	13	4.7e-06	0.022	13.9	12.7	4	18	542	556	540	557	0.95
4	13	6.6e-08	0.0003	19.8	17.7	1	18	593	610	593	611	0.98
5	13	2.3e-07	0.0011	18.1	14.1	1	18	649	666	649	667	0.98
6	13	0.71	3.3e+03	-2.7	0.6	5	10	696	701	696	701	0.95
7	13	5.3e-06	0.025	13.7	13.2	4	18	714	728	707	729	0.86
8	13	1.5	7e+03	-3.7	2.0	5	10	758	763	758	763	0.93
9	13	0.014	66	2.7	11.4	1	11	769	779	769	791	0.88
10	13	4.5e-10	2.1e-06	26.7	15.1	1	19	796	814	796	814	0.98
11	13	2	9.2e+03	-4.7	8.3	10	19	861	871	853	871	0.83
12	13	7.9e-06	0.037	13.2	15.3	1	16	907	922	907	933	0.87
13	13	2.9e-06	0.014	14.5	12.3	1	19	939	958	939	958	0.97

Sequence Information

Coding Sequence: ATGGCCACTTGGGATGGCTCATGTCACGAACCTGAagattcaaattattttttttattcgggTCAAAATAGTGCCATACCTAATCTAGAAAGTTGGACTTTTTATCCCAGTAATGGGAGCAACGTTTTTTTCCATAGTACTCATGCACCATATTCACAAAATACTTCAATGATGTTGGGACAAAGTGAACAGCAGCATATTGCTTCGTGTCAAACGGATCCTAATTTTTCATCAAGTTCATTAAATTCAATGCCTTTAAGAGACGCTTGCCCAGATTACTTAAATGCGACAGGCAGCGCACAAGACTGTCAAGGTAACAGTAGGTCACAGAATATGCCAGCTCATTATTATCAAAGCCATCGACAAGGGAAACGTGTTAAGAATTATAgagataacaataaatatgaattttctaaAGATGCTACTCGCAACAATAGCAGCATTGTCGAACATTCCAATTTACATCCTACTGCAAATGAATTTGTACCGCATGGAATCAAAAATTACACAAATCAAACTAATGCAAGTCTACATGTTTCTAATTCGGAAGATTCTAAAGCTAACTTACCGCAAGAAACTTATGCTTCTGATAATGCGAgcaaatataagaataagaaatataatgggaagaaaaataattcttacaaATACAAAGAAACGCAGGATTATAACTTTCGacaaagaaattcatttcaaaattCCTATAAAACTCAACACGGcagaaattatagaaaatatccaAATActTCTGAAGAGGCTGGAGGCATGTTTTATAATCCTAGAAATAATGCAACCACCGATGAAACtcagaagaatgaaaaatttatgaatattgATGCAAATGTCAATGCcaataaaactaatatatCTAACACCGAAGAAGAACATGAAACTGGTGATCAAGTAAAAGctgataaagaaaatacagaTGCTAGTGGAACTACAAGTCAAAATTATGAACAATTGAGTAGAAGTAATTATCAACGCCATAATACTAATTTTGGAACACAACGTATTCCTGCTAAATATGGTAGAAAAGTTTCAAATGATCGCAAAATTGGTagatatgataataattatcgtgagagaaaaagtaactATCAggagtataataattacaaggAGAGACATGAAGAAAGTAAAGTAGATACTACTaaggataaatataaaaataaagatataaaccAAGAAACTAAAGAGGTAGAAATTGTTAATTGGAGACAAAAGGGAGAAAACAgtgataaaagtaatattccTAAACGAAAGCCGAATAAAAAACACGAagaTGATGATGCAagtcagagagaaagattaacAGATCAGTTAAATAGAGGACAATTAGAATGTTTAGTATGCTGCGAATATATAAAGCAAAATGATTACATTTGGTCTTGTTCCAATTGTTATCATGTTTTACATTTaaagtgtataaaaaaatgggCAAAATCTTCCCAAGCAGAAAACGGTTGGAGATGTCCCGCATGCCAAAATGTGAGCACTATGATTCctgaagaatatttttgtttttgtggaaaaacaaaaatgccTGAATGGAATCGCAGAGATATGGCTCATTCTTGTGGTGAAGTTTGTGGGAGATCTCGAATCAAAAACAACTGCCCTCATAAATGTACTTTGCTGTGTCATCCAGGATCTTGTCCATCATGTATTGCAAtggtaacaaaaaattgtggTTGTGGTAAAACATCGCAAACGCTACAATGCTGTACATTAACACTATTACTCTGCGATTCTATTTGTGGTAAAGTATTGAATTGCGGAGAACATAcgtgtgaaaaaaaatgtcatcaTGGGGAATGCGAACCTTGTGATAAAATTATACAGCAAGAATGTTATtgtggaaaaagtaaaagagatgTAACTTGTCAATCTGACGTATCTTCAACATATTCctgtgaaaataattgtaataaggTATTAGATTGTGGAAATCATAAATGCAAAAAACCTTGTCATTCGAATTCATGCGAGCCTTGTGCATTTACACCTGATAAAATTACTACATGCTGTTGTGGACGAACACCACTGTCagatgaaagaaaatcttGTTTAGATCCAATTCCAACTTGTGATGAAATATGTTCTAAACGTCTTAATTGTGGTCAGCCTAgtaACCCACATACATGCAAGGTAAAGTGTCATCAAGGAGATTGTCCTGAATGCGATTTAACAACGGACGTTAAATGCCGTTGCGGTAATATGGATAGAGAAATTCAATGTAAAGATTTAACGACCAAGGCGGATGATGCACGTTGTGAAAAGAAGTGTATTAAAAAGAGATCTTGCGGAAAACATAAGTGTAATCAAATGTGTTGCATTGATCTTGAACATATTTGTCCTTTACCTTGTTCTAAAACATTAAGTTGTGGTAGACATAAATGTGAACAAMCCTGCCATAAAGgTAGGTGCCAACCTTGCTGGCGTAGTAGTTTTGACGAATTATATTGTGAATGTGGTACAGCTGTAATATATCCACCTGTACCTTGTGGAACTAGAAGACCCATTTGTGATAAACCTTGTTCACGTGATCATTCGTGTGGTCATGAAGTATTTCATAATTGTCACAGTGAATCTTCATGTCCCCCATGTACTTATCTTACTGAAAAATGGTGTTATGGCAAGCACGAACTTAGAAAAGCTGTTCCatgttattttaatgaaatttcatgTGGCTTAATGTGTAATAAGCCTTTGTCCTGTGGAAGACATAAATGTATAACTACATGCCATCCTGGATCATGTGAAAAGCCAGGACAGCAATGTGTTCAACCATGTAATACATTAAGAGAATTATGTGGGCATATATGTGCGGCTCCATGTCACGAGGGAAAATGTCCTGATATACCTTGTAAAGAAATGGTTAAAgtAACGTGTCAATGTGGACATAGAAGTACGACCAGAGTATGCGAAGAAAATTCGCGAGAATATCAAAGAATAACCAGCAACATTTTAGCTAGTAAAATGGCTGACATGCAACTAGGTCATTCTGTTGATTTAGAAGAACTTTTTGGACCAGGagcaaagaaacaaaatcaattgaaaattcTCGAATGTAGCgatgaatgtaaaataatagaacGTAATAGAAGATTAGCATTAGGGCTTCAAATTGTTAATCCAGATTTAAGTGGAAAATTAATGCCAAGATATACCGATTATATGAAACAATGGGCAAAAAAAGATCCTCATTTTTGTCAAATGGTTCATGACAAATTAACAGAATTAGTGCAGCTTGCAAAGACTTCTAAACAGAAATCAAGAAGTTATTCGTTTGATAGTATGAACAGAGATAAGCGTCGTTTCATTCACGAATCCTGCGAACATTTTGGTTGCGAAAGTCAAGCATATGATTTGGAGCCAAAAAGAAACGTTGTTGCTACTGCTGTAAAAGATAAGTGTTGGCTACCAAGTTATAGTTTATTAGAAATTGTGCAAAGAAACAATGGACAAAGAAAAGTTCCAGGCCCGATATTGAATACTACAAAAGCCAACAGTTCAATAAAAACAATCTTAGCATTACCTGTAAAAAGAAGTCAACAAATTGTACCAACTCCATCAACTTCTTCAAGATCACCAGAACCAGAACCAGAAAtagattatttctattataaaggttattaa
Protein Sequence: MATWDGSCHEPEDSNYFFYSGQNSAIPNLESWTFYPSNGSNVFFHSTHAPYSQNTSMMLGQSEQQHIASCQTDPNFSSSSLNSMPLRDACPDYLNATGSAQDCQGNSRSQNMPAHYYQSHRQGKRVKNYRDNNKYEFSKDATRNNSSIVEHSNLHPTANEFVPHGIKNYTNQTNASLHVSNSEDSKANLPQETYASDNASKYKNKKYNGKKNNSYKYKETQDYNFRQRNSFQNSYKTQHGRNYRKYPNTSEEAGGMFYNPRNNATTDETQKNEKFMNIDANVNANKTNISNTEEEHETGDQVKADKENTDASGTTSQNYEQLSRSNYQRHNTNFGTQRIPAKYGRKVSNDRKIGRYDNNYRERKSNYQEYNNYKERHEESKVDTTKDKYKNKDINQETKEVEIVNWRQKGENSDKSNIPKRKPNKKHEDDDASQRERLTDQLNRGQLECLVCCEYIKQNDYIWSCSNCYHVLHLKCIKKWAKSSQAENGWRCPACQNVSTMIPEEYFCFCGKTKMPEWNRRDMAHSCGEVCGRSRIKNNCPHKCTLLCHPGSCPSCIAMVTKNCGCGKTSQTLQCCTLTLLLCDSICGKVLNCGEHTCEKKCHHGECEPCDKIIQQECYCGKSKRDVTCQSDVSSTYSCENNCNKVLDCGNHKCKKPCHSNSCEPCAFTPDKITTCCCGRTPLSDERKSCLDPIPTCDEICSKRLNCGQPSNPHTCKVKCHQGDCPECDLTTDVKCRCGNMDREIQCKDLTTKADDARCEKKCIKKRSCGKHKCNQMCCIDLEHICPLPCSKTLSCGRHKCEQXCHKGRCQPCWRSSFDELYCECGTAVIYPPVPCGTRRPICDKPCSRDHSCGHEVFHNCHSESSCPPCTYLTEKWCYGKHELRKAVPCYFNEISCGLMCNKPLSCGRHKCITTCHPGSCEKPGQQCVQPCNTLRELCGHICAAPCHEGKCPDIPCKEMVKVTCQCGHRSTTRVCEENSREYQRITSNILASKMADMQLGHSVDLEELFGPGAKKQNQLKILECSDECKIIERNRRLALGLQIVNPDLSGKLMPRYTDYMKQWAKKDPHFCQMVHDKLTELVQLAKTSKQKSRSYSFDSMNRDKRRFIHESCEHFGCESQAYDLEPKRNVVATAVKDKCWLPSYSLLEIVQRNNGQRKVPGPILNTTKANSSIKTILALPVKRSQQIVPTPSTSSRSPEPEPEIDYFYYKGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01235401;
90% Identity: iTF_01235401;
80% Identity: -