Pcan004610.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- pnr
- Assembly
- GCA_001313835.1
- Location
- NW:628399-640627[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.87 1.1e+03 -1.7 0.1 21 26 56 61 54 64 0.79 2 3 1.4 1.8e+03 -2.3 0.2 3 12 230 244 229 246 0.62 3 3 9.4e-17 1.2e-13 49.4 5.1 1 35 417 450 417 451 0.98
Sequence Information
- Coding Sequence
- atgattaatatatcgGCCAAGTTGCACGACCTGTGTCGCCTTTGTTTATCCACGAAAGATGTCAAAACATCCATATTTGAGGAGCAAGGCTTACAGCAAAATCTCGCCGACAAGATATTAGCATGCCTCGGTGTTGAGGTGAAAAAAGATGATTTTCTACCATCTAAGTTATGTACCCGATGTACATTCAAGTTAGAATCACTATACAATTTTCGTGAGTGTGCACAAAAATCAGATAGCTTATTTAAACGGTACCTGAGTTTCCCCCATCGATCATCAATCAATGATGTTCAGGTAAATTCTTTCTCCACTGCCAAAATATCAGATGTAAATCCCGTACAatcttttattgaattaaataaaacgttatttAATGAAGACCCAAATTCTCCAGCCAGCATTAATCAAAACACAATACCTCAAATACAAACACACAGATTAGAATTGCGTACAAATGAAGTGctagaaaatgataataataaatgtgaacCAGAAGATGATACGTGTTCGTACAGTTCAGATCCAGATAGACTCGAAATAGAGGATCGAGATGAACAAGATACCGAAGGTGAAGAAAATGGCTATGATATGACCatgaaacgaattaaaatgaaCGATAACTGTGAAGATTCTAAACCAGATACACCTCATCATAGTCCAGTTAATAGGATGGATACACCAGAAAGCAATTGTTCGGATACTCATATCGATCAAGAAACTACAAAATTGTGGCAAGCCCTTGCAAATACTAGAAATTTGGAAGTAAcacgaacaaaagaaaataatgtaaacaaTGGTTTTACCGGAGAAGCAACTAATCTGCTTCGatctttaatcaaaaatagaCAAATTGGTATTACTACTGTTGATTCTAATAAATCGCCTACacaaataagattttataagGACGCTCCAGGAACAAATACTGAACATTCTTTAGCTGATTCTTCTGTACCTGGGGCGAATTGTATTACTACACCAtgcatagaaaataaaATTACTTCTATAGACAGTAATCCATCCAGTCCAGCTAGTACTGGACGAAAAGAAACTAAAGgtcgaagaaaacaaagtTATCCAAGTAAGGCTCCAACAAGCCCAGACACTGCTAATTATCAACATGAGTCTAGCGAAGAGCAAGCACAAGATTTTACTGGATGgtcatataaaatgaaaataaaaGTTGACGATCAAAAACCACAATTCGATCAACAAAGTGgtaataatactaaaaaaaatgatatggCTTGTACTAATTGTGGTACTATGACTACAACGATCTGGCGGAGAAATATGAAGGGTGAAATGGTTTGTAATGCGTGCGGACTTTATTATAAACTTCATGGAGTTAATCGTCCAGTTACCATGCGAAGAGACACAATACACACACGCAGACGCCGACCTAAAGGCGAAAAACAAACACGACATAGAAAAAAAGGAGATGCAGCAGTACCACCACAATCTGAACAATCTGATTCTGAAAAAGTTATGCTGGCGGCTTTGCGTCAAACAATTCAGCCTCATCTTCTAATGGGAGGATTACCACGTATACCTGGTAGCCATGGACCATTTTCTACTACACTTAATTTTCCAATGATGTCGGGTTATGTACTACATCCTGTGAAAACTGAAGCTCCAGAACAACAACAATGTCTTTCGGTAAAGACTGAAGAAACGCAGGAAGGagatgaagaaaatgtttcagaTGTACCATTAAATTTGGTTGCGACATCGTTAGCTGAAGATACGCAGTGA
- Protein Sequence
- MINISAKLHDLCRLCLSTKDVKTSIFEEQGLQQNLADKILACLGVEVKKDDFLPSKLCTRCTFKLESLYNFRECAQKSDSLFKRYLSFPHRSSINDVQVNSFSTAKISDVNPVQSFIELNKTLFNEDPNSPASINQNTIPQIQTHRLELRTNEVLENDNNKCEPEDDTCSYSSDPDRLEIEDRDEQDTEGEENGYDMTMKRIKMNDNCEDSKPDTPHHSPVNRMDTPESNCSDTHIDQETTKLWQALANTRNLEVTRTKENNVNNGFTGEATNLLRSLIKNRQIGITTVDSNKSPTQIRFYKDAPGTNTEHSLADSSVPGANCITTPCIENKITSIDSNPSSPASTGRKETKGRRKQSYPSKAPTSPDTANYQHESSEEQAQDFTGWSYKMKIKVDDQKPQFDQQSGNNTKKNDMACTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRPKGEKQTRHRKKGDAAVPPQSEQSDSEKVMLAALRQTIQPHLLMGGLPRIPGSHGPFSTTLNFPMMSGYVLHPVKTEAPEQQQCLSVKTEETQEGDEENVSDVPLNLVATSLAEDTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01234696; iTF_01234026; iTF_01235389;
- 90% Identity
- -
- 80% Identity
- -