Pcan008659.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- ZNF131_1
- Assembly
- GCA_001313835.1
- Location
- NW:451235-485162[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.1 5.7e+02 0.4 0.3 3 23 369 391 369 391 0.86 2 16 1.9 1.2e+02 2.6 0.9 2 23 446 466 445 466 0.94 3 16 8.7 5.4e+02 0.5 2.3 1 23 498 522 498 522 0.91 4 16 6.1 3.8e+02 1.0 0.8 1 22 533 554 533 557 0.88 5 16 0.017 1.1 9.0 0.6 2 21 579 598 578 602 0.89 6 16 0.0018 0.12 12.0 0.8 2 23 617 639 616 639 0.96 7 16 0.63 39 4.1 1.0 1 23 658 682 658 682 0.92 8 16 0.037 2.3 7.9 0.0 1 21 730 750 730 751 0.95 9 16 0.77 48 3.8 0.2 2 19 773 790 772 794 0.82 10 16 3e-06 0.00019 20.8 0.9 1 23 813 834 813 834 0.99 11 16 1.1 69 3.3 0.4 1 16 840 855 840 860 0.89 12 16 3.1e-05 0.002 17.6 2.4 1 23 880 902 880 902 0.98 13 16 0.003 0.19 11.4 0.1 1 23 907 932 907 932 0.96 14 16 0.00044 0.027 14.0 2.0 1 23 941 963 941 963 0.97 15 16 0.57 36 4.2 4.1 1 23 975 999 975 999 0.95 16 16 0.0019 0.12 12.0 3.1 1 21 1005 1025 1005 1030 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGGGTTACGAGGATGACGACGATACGCACTTTTGTATAAAGTGTCACGTTACGATACACGGATTAGAAAATTATGTTCGTCATCGTCAATCTGGATGTCGTCCACCCGACGACAAAGCAGAAACCGCACGAGAATCGCCCTCAACTCCGACAACGGTCTCTTATCCGGAAATATTGAACGCGGATGCTTTCTTCAGTTCGTTGGAATTACAGAGCAGTTCGAAATCTAATCCCAGACGTACGAATACTCTATTAGAGAGTAACAGAAAATACAAGAGGAATGAACGACGAAAGAAAGGTCAAAAGACGCCAGCGGATACCGAGGATTCCAAAGAAAAGCTTCACAGTATGTTACCAGCTGATACCGATTTGGACGATCCCGAGGAACACCTCTGCATTCCGTCTTTCGTTGGGTTCTCCGATATCGTTACTTCAACCGCCAATAAATCTACGACTACTGTCAATTCGAACAAATTGAATCAATCGATTAGACATTCTACTATAAACATCGAAACTTCGAATTTTCCGATCAAACACGAACCGGATCATTCCTTGGAAGGTTTAGTTAATGATTCGAAACAAACCGATAGAAAAAGGCCggaagaaaatcaaagaatCGAACaagatcatcatcatcatcagacGTGGCTGGACGATACGATATTAGCCGatctcgttgaaaataatgaaaataaagatttgaCAAGATACGAGGAATTCGAGTATCAGCAGGACGTCGACTCGGACGATGATATGTTAGACGAAGATCTTGCCGAGGAGGAATCTTATTCCGAATCCGACGACGGTGAAGATCAGGAAAGACCACCACGAGGTCACACAGGTGGAAAATGGAAACCTGGCTTGAACGATCTTCCTCAGAATATAACTCAGTTGCAAGACGACGAAGTAGAAGTCGAAGAGGATCAACATTCGGAACACCCACCGCCCAGTTACACCGGTGGCAAGTGGAGGCCCACGGAATCAGctcagAAAGATGAGGATTATCAGGGCAAGAATACAGCGGGACAACCACCACCAGAACACACGCAAGGAAAATGGATACCGGGTACGCAAACGGATATCGACTCGGGATATTGGTGCAATCCTTGCGGCAGGAAGCTTGCGTCGCGATTGGTCTATAACAGGCACCTTCTCACTGACTTGCACGCTAAAAGGAGCATTCGTGAGATCGACGATGATGTTTATCTACCGCGTACTGCAAGGAGAATATCGACGCGACGGCAAGTCGCCCTAGCGGAGAAAAGCAAACATTCATCCGAGGATGATGAAGTCAAGAAGAATCctcgtaaaagagaaaaagaagtactCTCGTGCGAGATGTGTCACGCTCGCGTGAGAAAAGCTCAAATGGGCAAACATTTGCTTTCCCATTACCATTGCCGCGTGGCAGGAATAAATCCTCAGAGTCTAAGGACGCGTCGATTTCTATTGGAGAACATGAGGAACGTAGTTCGCCAGTGTCCATTCCAATGCGCTTCTTGTCGTTTCTACTGTAATACCGAAGAAACCTTTTTACTTCATTGGCGTTCGGAACTTCACTctaaaactttgaaaaaaATAAGTGGAAGCTACAGATGCGGTTCTTGCGATTTCTGGTGTGCTGACAATGAAACAATGGAGACACACTTATTAAGCACGAGTCATCGTGACGTGGTATCAATGATGAACGGTTCGGTACCGGTGGTAATCAGTCGTCAACAAGCATTGCCCTGTAGCAGCTGCAACCGTCAATTCCGATATAATCTGCAGCTGCGAATGCACGTCAAGGAGACAGGACACAAGGAAAGCCTCACAGCATCGGACAAGTATCAACAGCGTATCACGTGCAGCATGTGCCCCCAAGTCGTGAGGTCCTTGATATCTCTTCAACGCCATCAGCTAAGCTGTCACGTTAACAAGGAAAGCGAAATGAACGAATTGGCCCTTTCCACGCAACCAACGCCttacttttgttctttttgttcgcTGAACTTTGCTACCACTCAAGAAGCCGTTCTTCATCGAAGAACCTCGACTCACAAGGAAATTGTTAAACAACTCAAATTCCCGTCtgaaaaatcattaaacaaAATCATTAGAAATTGTCCGCATTGCGGCGAGAAGCAATCAAATCTCGAGGAACACAAGGAACATCTTCTGAACAAGCATTTAAAATTGTGTTACAGATGTCCACAATGTGGAGTACTTTTTGCTCTTCCGCAAGAAGTAGCGAGACACACCAGGGACAACAAGTGTAgcaagaaaaaggaagttaATGATACGAAGGCAACAGTGGTAAAAGAAGAATGGAAGtgcaaaatttgtaatttctcGACGGATTTACAATCGGAACTGATATTTCACGAGGCCCTTCATAATGGCAGCGTTCAATCGAGCAAGGACAAACGCTATAACAAATTGATAGTCAAATATCGGTGTCCTgtgtgtaaaaaaattttcactaAGGTCTCCCTAAGGAACCACATCAGAATGCATACGGGTGAACGGCCATTTTCGTGTGCCAAGTGTTACGTGTCATTTATAAGAAGGCCTGACCTGAGCtttcatgaaaaaaattgttccaCCAATTCGACGACTGGCTTGCCGAACGAGATTCATCGCAGAAGAAATTTTGTCTGTTCGGAATGCGACAGCGCTTTTTACACCAAACACGCATTAAGACAACATATGTTTACACATGCTGGTAAAAACTACAAGTGCGGTCTTCCAGGTTGTCCCACTATGCTACGTACAGCTTCCGAGTTGAAGTATCATCGTTCCATGATCCACGGCGACGCCTCTATCAGTAGAAAATATCCTTGCGAGCACTGTTCTTATGCAGCTAAAACTAGAACCCAACTTCGCAGGCATCAGGTCAGGCACGAAGAATCAACGAGCGTGGAGAAACTTAGATATCATTCCTGTCCTTACTCCGGTTGCACTTTTAGAACCAGACTTAGTTTTCATCTACGCCGACACGTGCTGTTGCACACGGGAACCAAACCGTACAAGTGTCGTTATTGTACTTACGCCTGCAATAATCTGGAAAATCTTAGGAAACACGTACTATCCAAGACTCTGCATCCCGGCAAATCGATCTACGAGTGTGACTTTTGTGCTACGAAAAATACCGATACCTTTTGCACAAACTTTTCCAGAGAATTGCGAGCTCATCTATTAGACTCCCATGGcgacaaatttaaaaatcccGAAGACGCGAGAAAATACATTCTCAATATGTTCGAGGTCGTTCCTGATTCGGAACCGGCAGATGAGCCgcattaa
- Protein Sequence
- MEEGYEDDDDTHFCIKCHVTIHGLENYVRHRQSGCRPPDDKAETARESPSTPTTVSYPEILNADAFFSSLELQSSSKSNPRRTNTLLESNRKYKRNERRKKGQKTPADTEDSKEKLHSMLPADTDLDDPEEHLCIPSFVGFSDIVTSTANKSTTTVNSNKLNQSIRHSTINIETSNFPIKHEPDHSLEGLVNDSKQTDRKRPEENQRIEQDHHHHQTWLDDTILADLVENNENKDLTRYEEFEYQQDVDSDDDMLDEDLAEEESYSESDDGEDQERPPRGHTGGKWKPGLNDLPQNITQLQDDEVEVEEDQHSEHPPPSYTGGKWRPTESAQKDEDYQGKNTAGQPPPEHTQGKWIPGTQTDIDSGYWCNPCGRKLASRLVYNRHLLTDLHAKRSIREIDDDVYLPRTARRISTRRQVALAEKSKHSSEDDEVKKNPRKREKEVLSCEMCHARVRKAQMGKHLLSHYHCRVAGINPQSLRTRRFLLENMRNVVRQCPFQCASCRFYCNTEETFLLHWRSELHSKTLKKISGSYRCGSCDFWCADNETMETHLLSTSHRDVVSMMNGSVPVVISRQQALPCSSCNRQFRYNLQLRMHVKETGHKESLTASDKYQQRITCSMCPQVVRSLISLQRHQLSCHVNKESEMNELALSTQPTPYFCSFCSLNFATTQEAVLHRRTSTHKEIVKQLKFPSEKSLNKIIRNCPHCGEKQSNLEEHKEHLLNKHLKLCYRCPQCGVLFALPQEVARHTRDNKCSKKKEVNDTKATVVKEEWKCKICNFSTDLQSELIFHEALHNGSVQSSKDKRYNKLIVKYRCPVCKKIFTKVSLRNHIRMHTGERPFSCAKCYVSFIRRPDLSFHEKNCSTNSTTGLPNEIHRRRNFVCSECDSAFYTKHALRQHMFTHAGKNYKCGLPGCPTMLRTASELKYHRSMIHGDASISRKYPCEHCSYAAKTRTQLRRHQVRHEESTSVEKLRYHSCPYSGCTFRTRLSFHLRRHVLLHTGTKPYKCRYCTYACNNLENLRKHVLSKTLHPGKSIYECDFCATKNTDTFCTNFSRELRAHLLDSHGDKFKNPEDARKYILNMFEVVPDSEPADEPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513808;
- 90% Identity
- iTF_01235273;
- 80% Identity
- -