Basic Information

Insect: Polistes canadensis
Gene Symbol: -
Assembly: GCA_001313835.1
Location: NW:7983-15429[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.58 36 4.2 0.2 2 13 148 159 147 163 0.90

2 17 0.031 1.9 8.2 4.3 1 23 202 225 202 225 0.95

3 17 0.00011 0.0071 15.9 2.6 1 23 594 617 594 617 0.97

4 17 0.18 11 5.8 0.3 5 23 624 643 622 643 0.94

5 17 0.95 59 3.5 2.7 2 23 649 670 648 670 0.96

6 17 0.0023 0.14 11.8 0.8 1 22 937 958 937 958 0.96

7 17 5.4e-05 0.0034 16.9 1.3 2 23 966 988 966 988 0.92

8 17 0.0096 0.6 9.8 4.0 3 23 1000 1021 998 1021 0.91

9 17 1.1 70 3.3 0.3 3 20 1050 1067 1048 1071 0.83

10 17 0.23 14 5.4 5.7 1 23 1076 1099 1076 1099 0.93

11 17 0.023 1.4 8.6 0.8 1 23 1110 1133 1110 1133 0.94

12 17 0.56 35 4.2 0.1 1 20 1155 1174 1155 1176 0.89

13 17 0.16 10 5.9 4.7 1 23 1183 1206 1183 1206 0.96

14 17 0.42 26 4.6 1.3 1 23 1215 1238 1215 1238 0.87

15 17 0.024 1.5 8.5 0.1 1 20 1295 1314 1295 1316 0.94

16 17 0.00079 0.049 13.2 0.6 1 23 1323 1345 1323 1345 0.97

17 17 0.26 16 5.3 0.4 1 23 1355 1378 1355 1378 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.58	36	4.2	0.2	2	13	148	159	147	163	0.90
2	17	0.031	1.9	8.2	4.3	1	23	202	225	202	225	0.95
3	17	0.00011	0.0071	15.9	2.6	1	23	594	617	594	617	0.97
4	17	0.18	11	5.8	0.3	5	23	624	643	622	643	0.94
5	17	0.95	59	3.5	2.7	2	23	649	670	648	670	0.96
6	17	0.0023	0.14	11.8	0.8	1	22	937	958	937	958	0.96
7	17	5.4e-05	0.0034	16.9	1.3	2	23	966	988	966	988	0.92
8	17	0.0096	0.6	9.8	4.0	3	23	1000	1021	998	1021	0.91
9	17	1.1	70	3.3	0.3	3	20	1050	1067	1048	1071	0.83
10	17	0.23	14	5.4	5.7	1	23	1076	1099	1076	1099	0.93
11	17	0.023	1.4	8.6	0.8	1	23	1110	1133	1110	1133	0.94
12	17	0.56	35	4.2	0.1	1	20	1155	1174	1155	1176	0.89
13	17	0.16	10	5.9	4.7	1	23	1183	1206	1183	1206	0.96
14	17	0.42	26	4.6	1.3	1	23	1215	1238	1215	1238	0.87
15	17	0.024	1.5	8.5	0.1	1	20	1295	1314	1295	1316	0.94
16	17	0.00079	0.049	13.2	0.6	1	23	1323	1345	1323	1345	0.97
17	17	0.26	16	5.3	0.4	1	23	1355	1378	1355	1378	0.88

Sequence Information

Coding Sequence: atggAACAAGCTTGTCAGTCCTCAAGACCATTGGATTCTATGACTGctgaatttgatttttcagAAGTTTCTATATTtaacagagaaaaaatcaaGATTAAACAAGAGCCATGTGATAGGAACAACGTAAAGATGAATGACAATTGTGTATCGACTAATATACAGTGCAAATATATCGACCTAACCGAGGATAATAACAGTGAGGAAGAAAATGTTCCTTCTACAACTAAAAATCTTAGTAACAATGTAATAACTAGTCGAATTAGAATGGAATCTATTTTAATGGGTAATgcaataattgaaaatagtaAACATCTACAGCAAAAGAAACGTTCGTTTgtcataaataaaagtaatgaaaatgtTGGGACGTTAGAAAAAagtgataatattaatagatttaAACTAGAAAGAGATGAAGTACAGTTACATAAAACGACTCAATGTAACATATGTTTTTTGTCGTTCCGCAGtcagaaaattttaaattttcataatagTTATTATGAAcgtactaatatttatttttgtaacagTTGTGCTTCCAAATCTTGTTATCacattaaagagaaaaatagtaagAAGGCGTGTTTATGTTACATTTATGAATGCGATATTTGTAAAGGACGGTTTAAGCATAAGAGACGTATGCAAGCTCACATACTTCATTACcacaataaagaaataaatgagatgGACGTCGTAGAAACTgataaaattatgattaatcaTTCGACTGTTTCACATTCCATCACCCCAATCAAGGATAAATTGATACAACAGAAATGGGAcaacgaaagagaaacagaaggAACGGTTAATGAAAACTTACACAACTCTGAAGCGAGTATGTGTGAATCATTAACAAtgattaaacaagaaaaagaatggacaGATGATCAAGAAGGTGAATTATCGATGGATCATATAGTTTCAAATGTATTTCAAACtaaaaacaaaccaaaagaaaatagaatgcAATATAAACAACCGTTTGTTCAAATACACATTAACAAGAATATGATGGAAgctcttttaaaaatttcggATAACAATCTCCTTGACAAATCTTTGCCATATGACGGTAATACTAATAGTAAtactaatagtaataattataaaagtaataatagtattacTACAAAATCTTATGCATTACCTTCcctaaataattcaaaagagGTTAATAATAGCGTAACATCACCTACAGTTgtacagaaaaataatcaaagcgATGATAAATTAAGTAAACATTTAAATGCGTGTAAACCATGTATAATTCCTCTGGTAAAATGTGatagtattataaatgtaataacacCAACTAAATTGAATTcgaattttttacaatttaatagaCTATCTTCTCGGATTTCACGATCATCACTTAATCATAAGTCTATTAACTGTAAATTAAGacctataaaaagaaagggtaCCACGTATTCTTCTATCGAAGAACTGCCCGTAAAAATCACTCGATCGCGAAGTATTAATAGTCCATTAGAATTACCTATAAgcgataatattatacatcgtAGGAATAAAAGGATGTTTGgtcaaaaattgaaaagatctccgagaaaaaataatataaagaattcCAAAATTACACCGAATGTTGAGAAACTCAATACTGAtgtattgaaaaacaaaaaactttcaattaagaatgttatattaaaggaagttaaaatatctttgttaAAGTTACCGGagattaaaaaggaaataatcgaGTCGGCAAATATTGGAAACGAAATTACTCCTGCAGAAACTTTTCcttgtaaaatttgtaatgCATCGTTGACATCGGAGAAAAATCTGAAAAAACATGTAAGGAAATGTCACACGGCGTATATTTCAACTATTTGCAAAGCGAGGTATACCTCGAAACAACTTTTATtgaatcattatttaaaagaacatGACATGTGGACTAGCAAATGCTGCGTTTGTCAACAATTCTTAAACAGCCGATTATTACTAAGACAACATTTGCTTTtacattgtattaaaataactttatcGAAGAAAGATCGTCCTGTTTcaaataagaattttaaatgtagttcatttaaaaattataattgcaAATCTACtgcttttaaaataatactgcGAATGCCGAAATCGTCAAAGAAACGTCTAAAAATTAATcatgatgataataaatattatgttgATAAACCAACAGAGCATCAGAAGAtctataataatgataagaataataaagaaaaacaaaagaaacatcaAGCGATCGATAATggtgagaataataaaaaaaaaacaatagaacctgaagaaattaataatgataagaagaataatcaAGAGAAAACAATAGAACctgaagaaattaataatgataagaatAATCAGGAAAAATCAATAGAATTTCAAAAGGTTGATGATAATGACGATCATAGCGATTATCTAGAAATATTAGAGGATAATTTTAACGTAAATAACGCTGAGAATATGACGAAACAAGTTAGTAAAAGCAAAGAGAATGATGATGCTAGtgttattgaaaaaagaaatgaaccaCAGACTGATTCCGTAATCTATCTTGATTTAATAGAACCATTAGAAAGTGATAATACTGAAGTTCCTTGTTCTAGTAATATGATAGAAGAACCAATAATGGATCCTTTGCAACTTGTTGACTCAACATTTATCATTTGTAATCCTAATGAGAATACACAAACAAAactaacattaaatattagtaaTTCGATACAACCGAGTGTTAACGACAGTAACGAGCCTATAGAAGTAACAGAAATTACAgcagagaagaaaaaatatccatGTTCTATTTGCAAACAACAGTTTCAAAAGCTTGAAAGTTTGCAACAACACAAACGTACCTACGAGTCGTCGTCCAATAATTATTGTAGCCACTGTGGGCTTTCTTTTTCGACTAAAAAGGTATTGAAAAATCACATGGATGCTGCTCACGATATAAGTATTtgtaattcatataaaatgcATTGCCAATTTTGTAATCAAGGTTTCCGTACTCAGAACAATCTTCGAATACACGAGTTGCATTATCATACAACAGCAgtaactaaaaacaaaaaaatcacgGATTTCTTGCAAATTTCGAAGAGCGAAAATAATCAATCGACAAAAATGATTTGCAAGGTTTGCGGCGTATTCTTTGACACTGTCGAACGTTATCAGTTACATAATACGTATTTTCATAAGGATCATATATTTCACTGTAAATTATGTAACAAAGTATTTCACGGATTGTATATGATGAACCGTCACAACAAACTTTTCCATCAATCTGGagatactttattattttacaaatacagATGCATATATTGTCACGAAGGATTTGCTGTCGAGATACAATTGCAAGCGCACATGTCACACGTGCATCCGAACAAACAAGTAGACAAATCATCGTTAAATTCCATGAATTATAATGAAACTAATAGATCATACGTATGTTCAAAATGTAACATGGAATTTCTTAGCGTTACCGAACTATTGATTCACATTGAACATTTTTCGGATTATGGCAGTTATAGATGTTTCAAATGTTCTCGAAAATGTTATAACTTATCGATACTCAACAATCACATGAATCTGACTCATTTCGATAACGAGTTAACGAAAAAATACATGTGTGATATTTGCGGTGAAGTTTTAACAtccgaaatttttcttttgtgtcaTCAGAAACACGTTCACGGTGagttaaaaaatgaacaaaccGTATCCACTGTCATTAACAAAAATCCTACAACTGATTTACATATTGACGAGATTGCTAATGACGATgtattaaaaatcgataatgAAACGGTATTACATACGAATCCTCCTAATTCCATTCCGAACGCTGTcacaaattacaatttttattgttcgATATGTCCCGTTAAGTTTGATaaggaaatttatttgaaGGAACATTTGATCGAATATTTGGATTACGGCGATTATCAGTGCAACGAATGTCTAAGGCGATTCGCAAATGttgattttttgaaaaaccACGTTGAAAATCATTTGAGACCGGGTATGGTCAAGACGAAATATTATTGCATTCTTTGCAACGAAGTTTTTAAATCCTCTATGGTCCTCGAATCTCACGTTGCTCATTTGCACGcacgtattatttttaaagatgatTTGCCAAAGGATgtttaa
Protein Sequence: MEQACQSSRPLDSMTAEFDFSEVSIFNREKIKIKQEPCDRNNVKMNDNCVSTNIQCKYIDLTEDNNSEEENVPSTTKNLSNNVITSRIRMESILMGNAIIENSKHLQQKKRSFVINKSNENVGTLEKSDNINRFKLERDEVQLHKTTQCNICFLSFRSQKILNFHNSYYERTNIYFCNSCASKSCYHIKEKNSKKACLCYIYECDICKGRFKHKRRMQAHILHYHNKEINEMDVVETDKIMINHSTVSHSITPIKDKLIQQKWDNERETEGTVNENLHNSEASMCESLTMIKQEKEWTDDQEGELSMDHIVSNVFQTKNKPKENRMQYKQPFVQIHINKNMMEALLKISDNNLLDKSLPYDGNTNSNTNSNNYKSNNSITTKSYALPSLNNSKEVNNSVTSPTVVQKNNQSDDKLSKHLNACKPCIIPLVKCDSIINVITPTKLNSNFLQFNRLSSRISRSSLNHKSINCKLRPIKRKGTTYSSIEELPVKITRSRSINSPLELPISDNIIHRRNKRMFGQKLKRSPRKNNIKNSKITPNVEKLNTDVLKNKKLSIKNVILKEVKISLLKLPEIKKEIIESANIGNEITPAETFPCKICNASLTSEKNLKKHVRKCHTAYISTICKARYTSKQLLLNHYLKEHDMWTSKCCVCQQFLNSRLLLRQHLLLHCIKITLSKKDRPVSNKNFKCSSFKNYNCKSTAFKIILRMPKSSKKRLKINHDDNKYYVDKPTEHQKIYNNDKNNKEKQKKHQAIDNGENNKKKTIEPEEINNDKKNNQEKTIEPEEINNDKNNQEKSIEFQKVDDNDDHSDYLEILEDNFNVNNAENMTKQVSKSKENDDASVIEKRNEPQTDSVIYLDLIEPLESDNTEVPCSSNMIEEPIMDPLQLVDSTFIICNPNENTQTKLTLNISNSIQPSVNDSNEPIEVTEITAEKKKYPCSICKQQFQKLESLQQHKRTYESSSNNYCSHCGLSFSTKKVLKNHMDAAHDISICNSYKMHCQFCNQGFRTQNNLRIHELHYHTTAVTKNKKITDFLQISKSENNQSTKMICKVCGVFFDTVERYQLHNTYFHKDHIFHCKLCNKVFHGLYMMNRHNKLFHQSGDTLLFYKYRCIYCHEGFAVEIQLQAHMSHVHPNKQVDKSSLNSMNYNETNRSYVCSKCNMEFLSVTELLIHIEHFSDYGSYRCFKCSRKCYNLSILNNHMNLTHFDNELTKKYMCDICGEVLTSEIFLLCHQKHVHGELKNEQTVSTVINKNPTTDLHIDEIANDDVLKIDNETVLHTNPPNSIPNAVTNYNFYCSICPVKFDKEIYLKEHLIEYLDYGDYQCNECLRRFANVDFLKNHVENHLRPGMVKTKYYCILCNEVFKSSMVLESHVAHLHARIIFKDDLPKDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -