Basic Information

Insect: Polistes canadensis
Gene Symbol: -
Assembly: GCA_001313835.1
Location: NW:362004-368504[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.9e-06 0.00056 19.3 1.2 1 23 146 168 146 168 0.97

2 15 0.002 0.12 12.0 6.2 1 23 174 196 174 196 0.97

3 15 4.8e-05 0.003 17.0 0.0 1 23 319 341 319 341 0.98

4 15 0.081 5 6.9 0.2 1 23 347 370 347 370 0.97

5 15 2e-05 0.0012 18.3 2.0 1 23 397 419 397 419 0.98

6 15 1.1 69 3.3 0.0 1 23 434 456 434 456 0.86

7 15 0.33 21 4.9 0.3 2 23 463 485 463 485 0.94

8 15 0.0025 0.16 11.6 3.0 2 19 493 510 493 514 0.95

9 15 0.00012 0.0077 15.7 3.5 3 23 522 542 520 542 0.97

10 15 0.0089 0.56 9.9 0.1 3 23 549 569 548 569 0.97

11 15 5.2e-06 0.00032 20.1 0.4 1 23 578 600 578 600 0.98

12 15 0.0023 0.14 11.8 0.2 3 23 608 628 606 628 0.97

13 15 0.002 0.12 11.9 0.2 3 23 636 656 634 657 0.94

14 15 0.22 14 5.5 0.0 1 23 671 693 671 693 0.93

15 15 0.00072 0.045 13.3 0.0 1 20 1072 1091 1072 1094 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.9e-06	0.00056	19.3	1.2	1	23	146	168	146	168	0.97
2	15	0.002	0.12	12.0	6.2	1	23	174	196	174	196	0.97
3	15	4.8e-05	0.003	17.0	0.0	1	23	319	341	319	341	0.98
4	15	0.081	5	6.9	0.2	1	23	347	370	347	370	0.97
5	15	2e-05	0.0012	18.3	2.0	1	23	397	419	397	419	0.98
6	15	1.1	69	3.3	0.0	1	23	434	456	434	456	0.86
7	15	0.33	21	4.9	0.3	2	23	463	485	463	485	0.94
8	15	0.0025	0.16	11.6	3.0	2	19	493	510	493	514	0.95
9	15	0.00012	0.0077	15.7	3.5	3	23	522	542	520	542	0.97
10	15	0.0089	0.56	9.9	0.1	3	23	549	569	548	569	0.97
11	15	5.2e-06	0.00032	20.1	0.4	1	23	578	600	578	600	0.98
12	15	0.0023	0.14	11.8	0.2	3	23	608	628	606	628	0.97
13	15	0.002	0.12	11.9	0.2	3	23	636	656	634	657	0.94
14	15	0.22	14	5.5	0.0	1	23	671	693	671	693	0.93
15	15	0.00072	0.045	13.3	0.0	1	20	1072	1091	1072	1094	0.94

Sequence Information

Coding Sequence: atggATGTTACTGGTGATTTAACTTTGCAATGGGTGGAAGAGGTAGGGAATGTGATTCACGAAGAAGTTATATGTGGTCTGGAAGCAGAACTGGTAGCATCCGAAGAAGAAGTAATAGGAGCCTGTGAAGAAGTTACAGTAGAAGAAACAGGAGAATCCGTTTCCAATGTACCTTCAACGACAGGATCTGAGATTTTAATGGTTCCTCAGAATAATGATATGGattctatttatatagtaCCACAAGATCAAGGTCACGATTATCTTAATATACAAGTTACAGAGGAAGTAATTGCAGATAATTGGGATAGATCTGGTCCAGATGATGGcgTCGAAATTCCAGAAACGAAAGTTTCTAATGACAATCTATTAGAATATGATGACATGGAAATACCATTACCTATAGATCAAGATTCCTATACAAATATTCGTCCATATCCATGCGATTTTTGTAGTCGAAGATtcagaaaaaaagcaaatttaATGAATCATATGGTTTCACATCAAACTGATCGTCCTCATCATTGCAATTTATGCGGAGCTCGTTATGTACGAAAATGTGATCTtatgaatcatttaaaaactCATGCTTATGCTCCATCTCGAGATGGCTTAGATGACGATTTAAACGATGACGACTCATTAGCCcccgaggaagaagaaactaaTAAAGGTAGACGTAAGAAAGTGCAATCCAATGCACCAAGAAAACGTAAAAACAATTCAACTATttccaaaagaaataatgatgatgTTAAAACTGAAATGagtaaatatgttaataaatcttaCGATTATGTGGATGAAGATATGCGCTTATTAGAAGAAATGACTAATCGAAATCCAGTTCGTGGTAATAATTATCCATCAAGTTCAAGATGGAATGAACAAATATCACCAGTATCTAATGAGCAGCAACCTCCACGGTGGCCTATTACAGATCCTACAAAACCATATGTTTGTCAATATTGTGGTGTAGGGTTTGCAAGAGAAAAAGCTCTTGCATCCCATGCTCGAGTTCATGGTGGAGATAGTCCATTTGAATGTACTTCTTGTAGTGAAATGTTCTGGGATGTTAATAGTTTAAGAGAACATGTTCGTATTAAACATGGAGGTACTACACAATTGGACATAGAAGATTATGATACCAATGATGCTACATACACAGGTGATGAGAGATTTGGagaattttattgcaacactTGTGGAGTTCCTTTTCATCGCCTAGATTTGCTTAAACGTCATCAAAAGATTCATGTCAAACAAGAAATGGACATAATGGAAGGTTCAAGTCAGCATCATGTATGCAATGTATGTGGCGAGTGGTTTGAAGAAGCATTAGCTCTATTAGCGCATGCCGAACTTCATGCTAGATCTCCTAGTCGTAGATGCTTATTATGTGGGGAGAGATGTCGTGATGATGCTGAAGTTGCAGAACATGTTCGTTTGAATCATGCAGAAGACGCTCCACCAAATACATGTACGCTTTGCGGGAAAACATGTAAAGACAAACGCAGTTTACTCAAACATTCATGGGTACATAATGTTGATAAAACATTTGGTTGTACAAAATGTGGGAAACGATTTCATAGCAAAGCTAGATTACGAagGCATATGGTTTCACATCGAAACAAAATGGTTGCATGCGATGAATGTGGAGAAGAATTTCCTGATGGTAGAGCTCTTGTGAGTCATCGTCATTCTCATAATAAAGACCTGGGTGGTCGTTCATTTCCTTGTCGTGAATGTGGAAAAACATTTGGAAGTCGTAGCTCTCAACAAATACATATTCGTATTCACACAGGAGAAAGACCTTATGGTTGCAGGTTTTGTTGGAAAGCATTTGCAGATGGTGGTACATTGAGAAAACATGAGCGGATTCATACAGGCGAAAAACCATATGGATGTGCTATCTGTCCTCGTGCATTTAAtcaaagagTAGTTCTTAGAGAACATGTACGAGCTCATCATTCAGGTCCTGATCCAAAATGCGTTGGTAGTATTACACCATACTTATGCAAAGTTTGTGGTGATGCTTATGCAACATCAGAAGAAATTGTTGCTCATATAGTTCAACATTGTGATGATAACACTGCACTAAGACGTCAACCACAGACCGGACCACGCAAATATAAAAGGAGGCGTAAATTGAAGCCTCATGAAACAACTACAATGTtaagaattaatgaaaattttgataCACTTGAAGGTGGATCTGATTCAGATGACAATACAAAACGAAAACTTGgtaggaaaaataaacaacataGATCAAATGTTGAAGAAGGTTATCAAAATGTTCTTAAAAGTTTTGAAAGttctttacaaaatataaattcaatagtAAGTAATTCTAAATTGAATCCTGctaaatcaaaattatcgaagaaaaaattgaggaaagaagaaaagaaaaatgaagggCAAACATCATGTCAATCAGGTAGACCTAAAATGATACACACTCAAAAAACAAGAGTACCTGTTGAAATGGGTAGTGATGGTGTTAAAAAGGGTCAAAAAACCAAAACGATGGTAACAAGAACTCCAAAAGTAATGCCAAGTGAACATAAACTGGGTATCTTCACtggaggagaaagaaatagaccaagaacaaaaaatgttagTTATCATATTGAGGGAAAATTACAGTTAACACCTGCAACATTTCCAAAgctaaaggaagaaaatgttaaattatcaACACAAGTACAGCCAccaatactaacaaatataaaaatagagcCTGGTGTACAAAAATCTGTGGATAGTAATCATAGTAATAATCAtagtaatattgtaaaaataaacagTGATAAATTAGACCGAACATCTAGAAAAAAGTCTActgtttttaagaaaataaagaaacaaaagcaaataaatataaaagaagaaccaaatgaaaatgtaaatgaagttgaaacacaaaataataataatacagaaaATACTAATTCTATACGGTTAATGGAGGAGCACACAGTAGATGGGGGTAGCCTAGAAGTTGCTTTTGAAGCTAGCGTAGTTACAGCGGAAGAAGAAACCATTCTTCCTGATATTGATACAGTGACTACTAATGATAATATTGGGAATGGAAATGTTCAACTTAGTGTAAAGGTGGAATCTACACCTCAAAGAATCTTGGCTGTTCATAGTGTTATTACACCTGTGGATGAAGTCGCAGAAACTATAATACCGGATACTTTGGAATACACATGTGAAATGTGTTCTATGGTATTCTCCAGTCGTGCTGAGCTTTTGGTGCATGTACCAAtacatatttga
Protein Sequence: MDVTGDLTLQWVEEVGNVIHEEVICGLEAELVASEEEVIGACEEVTVEETGESVSNVPSTTGSEILMVPQNNDMDSIYIVPQDQGHDYLNIQVTEEVIADNWDRSGPDDGVEIPETKVSNDNLLEYDDMEIPLPIDQDSYTNIRPYPCDFCSRRFRKKANLMNHMVSHQTDRPHHCNLCGARYVRKCDLMNHLKTHAYAPSRDGLDDDLNDDDSLAPEEEETNKGRRKKVQSNAPRKRKNNSTISKRNNDDVKTEMSKYVNKSYDYVDEDMRLLEEMTNRNPVRGNNYPSSSRWNEQISPVSNEQQPPRWPITDPTKPYVCQYCGVGFAREKALASHARVHGGDSPFECTSCSEMFWDVNSLREHVRIKHGGTTQLDIEDYDTNDATYTGDERFGEFYCNTCGVPFHRLDLLKRHQKIHVKQEMDIMEGSSQHHVCNVCGEWFEEALALLAHAELHARSPSRRCLLCGERCRDDAEVAEHVRLNHAEDAPPNTCTLCGKTCKDKRSLLKHSWVHNVDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRSFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCVGSITPYLCKVCGDAYATSEEIVAHIVQHCDDNTALRRQPQTGPRKYKRRRKLKPHETTTMLRINENFDTLEGGSDSDDNTKRKLGRKNKQHRSNVEEGYQNVLKSFESSLQNINSIVSNSKLNPAKSKLSKKKLRKEEKKNEGQTSCQSGRPKMIHTQKTRVPVEMGSDGVKKGQKTKTMVTRTPKVMPSEHKLGIFTGGERNRPRTKNVSYHIEGKLQLTPATFPKLKEENVKLSTQVQPPILTNIKIEPGVQKSVDSNHSNNHSNIVKINSDKLDRTSRKKSTVFKKIKKQKQINIKEEPNENVNEVETQNNNNTENTNSIRLMEEHTVDGGSLEVAFEASVVTAEEETILPDIDTVTTNDNIGNGNVQLSVKVESTPQRILAVHSVITPVDEVAETIIPDTLEYTCEMCSMVFSSRAELLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01424531;
90% Identity: iTF_01234507;
80% Identity: -