Pcan000609.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- ttk_2
- Assembly
- GCA_001313835.1
- Location
- NW:325400-336006[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-14 2.7e-11 42.0 0.1 1 42 357 398 357 401 0.94
Sequence Information
- Coding Sequence
- ATGGCGAGCACATCGACGCAGCAATATAGTATTCGTTGGAACAATTACCATTCTAATTTGTTATCAGTATTCGACgaacttttaataaatcaagCATTCGCTGACGTTACCTTATGTTTGGATGATGGTCAATCCCTCAAGTGCCACAAAGTAGTCCTTGCAGCCTGCTCTACTTACTTTCAAGATATGTTTTACAAACAACCACAAAAACATATAGTAGTAGCACTAAAAGATGTGGATTATTGTGAAATTAAGATTATATTGGAATACATGTATCGTGGTGAGATACATGTGGCTCATGACCAACTTGAAAGTCTACTGAAACTTgcgaaatcatttaaaatcaagGGTCTACTCGACATAAATGAAACCTCCAATTTGCCTATACAAAAAGATTACAGTAACGTGACGGCTACTACAATATCATCACCATATTGTTCGCCATCGTCACAACTAGTATCCAACATAACCAGCAGTATCTCCCATAACATTAAAACATCATCGCCTAATTCAAGTGAAATGGATGGCAGTCCACacggaactATGCCACCCCcggaagaagataaaaatcttttctacCACTATCATTTACCTATGCCACTGTTGGCCTTGTCATCGCCGCATTCTATTCTTCAAGCTGTCAATCCAAATTCAGGTCATTCCTCTACGCAAAGTATCACTATGAATACTCCTGAGGAGATAGGATTCGAAGAGACCAATTATAAACGGAGGAAACGCATATTGCCGAAATATTCTTTGGTTCAGGACACACCGATATTACGAACAGTTTTGAACCAAAGACATATCGATAGTTCACAACAACAAGCCTCACCGTCTATGTCATCGGATAACAACGAAGCAAGAAGTGATGCGATAGTGTCATTAAACGAAAGAGTTGTACGAGAGAGTATGGCTCTCGCAAATTATGAATCCTTAGAATCTAGTTCTTATGCCGATATGATAGACGAAGACAACAAACAATCACTACCTCCAACTTTAAACGATATGAATACAAgtcaccaccaccaccaccaccagaaGCCTGAATGGAAACGTTACAAACAATATACGCGAGAGAACATCAATAACGCAATCGAGGCAGTGAGAAATGGAGCGAGTGCATTGCAAGCAGCACGGATATACGGTGTCCCATCGCGTACACTTTACGATAAGGTAAAAAAATTAGGGATCACAAATAACCGACCTTCGAAACGTAGCGCAAGCAGATCTGATGGGGCAAGTTTATCTGGTAATTTCGGTGATAGTTCAAACAATTATGGCAGTAGTAGTGGCTTTGTGCCGGAATGTGATGATGAAACCAGCAACAGTAACAACCAACAAGAGAATACTTCGGGAACACAAGCTGAGACGAGTTTTGTCTCTGatattaaaatcaaagatgaattaatcaaattaaatatagacACTGATCAACAAACTAGTCTAAATGAAAgtcttataataaaagaagaagaaaatgaacatTATCCAACTTACGAGGATGAAATTCAGGATCTTTCGATGCATtccaaaaataacaaaactatAACAACGTCTAATATAGATGAGAAAAATTCAGATAATTTGAATCACAGCTAA
- Protein Sequence
- MASTSTQQYSIRWNNYHSNLLSVFDELLINQAFADVTLCLDDGQSLKCHKVVLAACSTYFQDMFYKQPQKHIVVALKDVDYCEIKIILEYMYRGEIHVAHDQLESLLKLAKSFKIKGLLDINETSNLPIQKDYSNVTATTISSPYCSPSSQLVSNITSSISHNIKTSSPNSSEMDGSPHGTMPPPEEDKNLFYHYHLPMPLLALSSPHSILQAVNPNSGHSSTQSITMNTPEEIGFEETNYKRRKRILPKYSLVQDTPILRTVLNQRHIDSSQQQASPSMSSDNNEARSDAIVSLNERVVRESMALANYESLESSSYADMIDEDNKQSLPPTLNDMNTSHHHHHHQKPEWKRYKQYTRENINNAIEAVRNGASALQAARIYGVPSRTLYDKVKKLGITNNRPSKRSASRSDGASLSGNFGDSSNNYGSSSGFVPECDDETSNSNNQQENTSGTQAETSFVSDIKIKDELIKLNIDTDQQTSLNESLIIKEEENEHYPTYEDEIQDLSMHSKNNKTITTSNIDEKNSDNLNHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01232476;
- 90% Identity
- iTF_01232476;
- 80% Identity
- iTF_01232476;