Basic Information

Gene Symbol
stc
Assembly
GCA_947397865.1
Location
OX377619.1:156373990-156379750[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3 6.3e+04 -4.3 1.6 15 19 499 503 498 503 0.81
2 13 0.12 2.4e+03 0.4 0.4 4 10 532 538 531 538 0.95
3 13 9.3e-06 0.19 13.5 16.4 4 19 546 561 544 561 0.94
4 13 3.2e-05 0.67 11.8 11.0 3 19 599 615 597 615 0.91
5 13 5.1e-07 0.011 17.5 17.7 1 19 655 673 655 673 0.98
6 13 0.0082 1.7e+02 4.1 12.6 4 18 721 735 714 736 0.86
7 13 0.011 2.4e+02 3.6 9.3 1 11 776 786 776 787 0.96
8 13 3 6.3e+04 -4.6 1.1 4 10 791 797 791 797 0.58
9 13 7.9e-10 1.7e-05 26.5 15.5 1 18 803 820 803 821 0.97
10 13 2.8 5.9e+04 -4.0 0.9 6 10 850 854 850 855 0.81
11 13 3 6.3e+04 -7.3 9.9 10 18 868 877 857 878 0.79
12 13 4.4e-06 0.092 14.5 15.4 1 17 914 930 914 939 0.93
13 13 7.9e-07 0.017 16.9 14.5 1 19 946 965 946 965 0.96

Sequence Information

Coding Sequence
ATGTTTGTAACACTCAGGCAATTCATAAATAGTGATAGTTTACTCCTTACTAATTTTACTCTTACTCTCTCCTTTCTCTCTTTGCAGTACTTCAATCCTTCGAGCGCATTATTGGCATTCAATAATTTCCAGCAACAAAATTGCAGCAACAATACTATATTTTCGGATAACTTACAAAATTACAACATCAATCCATTAGCAGCGATGGGTTCTGGGACCAGCGGATCCAATACAATGGTTTCCAATCATAATTACTACGACAACAGCTCCTCGTATGGTTTGCACTTCAATGCAGCAAATGGTGTTCTCGGTGGTGGTGATGCGACCACATATTATGCCAATCCCTTTGCTACGGGATTCGATTTCTCGGCCACAAAATTACAAGCTACGGCACCGGAATTTGTACCCCGATTTGACAAACTTTCGTTGAACGAAAGTGGTCAAGCCCAGCATAAAACGCAGCTGGAGAATGGCGGACGTGGCGTGGGGGGTCAGGACCAAGCAAAACATAATAGTAGGAGCGTTGGCTATGATGAACTAATAAATGACGTAACTAGCAGGGAAACGGAGACGACGACCACGGAGAAGTTGTCAAATGCCGATACTAGCTTTGAAAAGGAGGAAAAGCGGCAACAGCATCGTCAAGATCGCCGTAATAGCCGTCAAAACAACAACAAACAGGATAAAGAGAACAACAAGCGTAACAACAATCGCATGGAAAAGAATATGGAAAGATTTTCACGAAATTTACAAGAGAAACATGTGAACAATGATTCAGCCTCGAATTCCAATTCATCGACTCCCTCCATAACTATGAACGGTGGAGGGCCGGCAGGAGGAGGCCAGCAACAACAACAACACCAACAACATGCTGGTGTCCCAAGGTCTACGGGAGCCTTTAGCAAATCGCAAAATCATAAGAATGGCGAAAAATCCAGGAATAACAATGGTGGCAATGGGGGCGGCGAACACCCAGATAACCATGACAAAACTGAAAAATACAATAACAACAACAACAAACGTTACCAAAACGGCCGACGTTCCCAGGACTTTGGGGTCGAGCGCGAAGAACGTTTCGAGCGTTATGTAGATCGTGGCGAACGCCAGGACCGCGGACGTAATCAACGCAATGATTATCATCAGCGCTACGACAACTATCGCAGCAACAAGCGTCGCGACGATTGGAATCGCAACCGTGATCGCATCAATGGCTTCCGCGTGGAAGAGAAGTATTCGCACGATAATGGCAAGGACAGTCCCCTGCCCAGTCCCGAAAAGAAATCGCCCAAAAAGCTGTATCCCGAAAATGAGAAACTCTCTCAGCGCGAAAAGCTGATTCGAGACATGGAATGTCGACGTTTGGAATGTTTGGTGTGCGTGGAATCCATCAAGGCCCACCAGACTGTGTGGTCGTGCCACAACTGCTATCACATACTCCATTTGCAGTGCATCATAAAGTGGGCTTCTTCCTCGAAGTCAGACGATGGCTGGCGTTGCCCGGCCTGTCAAAATGTCGAAAAGGATGTGCCGCGGGACTACTATTGTTTCTGTGGCAAACTGAAGAATCCTCCCAACAATCGCCAAGACATCGCTCACTCGTGCGGTGAGGTATGTGCCCGTGTAGAAGGCTGCCCGCACGCCTGCACTCTGCTCTGTCATCCCGGCCCCTGTCCACCCTGCCAGGCTCAGGTCAAACGTGAATGCGGCTGTGGCAAAACTTCCAAAACCATGCAGTGCTGCATCAAAGAGACTATTGAATGTGATTCCACGTGTGACAAATTGTTGAACTGTGAATTGCACGTGTGCCTGGAGAAATGCCACGAGGGCAAATGTCCCGCATGCAAGGAGAAGGTTGATCAAAGATGTCATTGTACCAAAAACGAACGCCAGGTAACTTGTACCCGAGAATCGCACGACAAGCATGTGTACTCTTGTGGCAAGCCCTGCGGCAAAGATTTGGCTTGTGGCAATCATAAGTGCAAAGATTGCTGCCACGCCGGCGAGTGCAAGTCGTGCAAAATGGCTCCCGACACCGTGACGTCATGTCCCTGCGGCAAAATGCCCATAGTTCCCGAGCAGCGCAAATCGTGCCTCGATCCTGTGCCCGTCTGCGAAGGCGTCTGTGGCAAAACATTGAAATGTGGCAAATCCACCAATCCCCATCACTGCACTTTCAAATGCCACCTGGCCAATTGTCCACCCTGCAACAAGCAGACGGCCGTCAAATGTCGCTGCGGCCACATGGATCAGATGATTAAATGCCGCCAGTTGTCCACGCGCGCTGACGATGCCCGCTGCAAAAAACGCTGCACAAAGAAACGTTCCTGTGGCAAGCATAAGTGCAACCAAGAATGTTGCATTGACATCGATCATTTCTGTCCACTGCCCTGTAATTACACACTATCGTGTGGCAAGCACAAATGTGATCAGCCATGTCATCGCGGCAATTGTCCGCCCTGCTATCGCTCCTCGTTCGAGGAGCTCTTCTGTGAATGTGGTGCTGAAGTCATCTATCCTCCGGTGCCGTGCGGCACCAAGCGACCAGTATGCAAACGTCCGTGCTCGCGCAAACACCCGTGCGATCATGCACCCCAGCACAACTGTCATTCGTCGGCCACATGCCCGCCCTGCATGATGTTCACAACCAAATGGTGTTTCGGTCAACATGAACAACGCAAGACCATACCATGCTCACAGCAGAGTTTCTCGTGCGGCTTGGCGTGCAACAAGCCATTGCCCTGTGGTCGTCACAAATGCATCAAGACATGCCATGAGGGTGGCTGCCAAACGCCGGGAGAAATATGCAAGCAAAGTTGTACAACTGCCAGAGCCACGTGCGGGCATAAATGTATGTCGCCTTGTCACAACGGTGACTGCCCGGAGACGCCTTGCAAAGAAATGGTCGAAGTACAATGCGAATGCGGCAATCGCAAACAGATGCGCACATGCGCCGAATTGGCTCGTGAATTCAGTCGTATCGCGACCGCTCAATTGGCCTCATCCATGGCCGAAATGCAACGTGGCAACTACATGGAACTATCCGAAATTTTAGCTCCCGTCAAGCTATCCAACAAATCCAATAAAACGCTCGATTGTAATGACGAATGTCGTGTCCTGGAACGTAATCGTCGTCTGGCCATCGGTTTGCAAATACGCAATCCGGATTTGCCTCAGAAGCTATTGACAAAATATTCCGATTTCATAAGAAATTTCGCCAAACGGGATCCGGGCCTGGTGAAGTCCATACACGATGCTCTAACAACTCTGGTCAAACTGGCCAAAGAGAGTAAGCAGAAATCGCGCTCGCATTCGTTCCCCACAATGAATCGTGAAAAACGGCAGCTGGTCCATGAGATGTGCGAAATGTTTGGCGTTGAATCGGTGGCCTATGATGCTGAACCAAATCGTAATGTTGTGGCCACAGCGTTTAAAGATAGATCTTGGCTCCCTGCTACCAGTATCATGGAGGTTGTGGCTCGTGAGTCTGGCCAAAGACGTGTGCCAGTGCCAAGTAACAATGCCTGGGGCTTGAAAAGATAA
Protein Sequence
MFVTLRQFINSDSLLLTNFTLTLSFLSLQYFNPSSALLAFNNFQQQNCSNNTIFSDNLQNYNINPLAAMGSGTSGSNTMVSNHNYYDNSSSYGLHFNAANGVLGGGDATTYYANPFATGFDFSATKLQATAPEFVPRFDKLSLNESGQAQHKTQLENGGRGVGGQDQAKHNSRSVGYDELINDVTSRETETTTTEKLSNADTSFEKEEKRQQHRQDRRNSRQNNNKQDKENNKRNNNRMEKNMERFSRNLQEKHVNNDSASNSNSSTPSITMNGGGPAGGGQQQQQHQQHAGVPRSTGAFSKSQNHKNGEKSRNNNGGNGGGEHPDNHDKTEKYNNNNNKRYQNGRRSQDFGVEREERFERYVDRGERQDRGRNQRNDYHQRYDNYRSNKRRDDWNRNRDRINGFRVEEKYSHDNGKDSPLPSPEKKSPKKLYPENEKLSQREKLIRDMECRRLECLVCVESIKAHQTVWSCHNCYHILHLQCIIKWASSSKSDDGWRCPACQNVEKDVPRDYYCFCGKLKNPPNNRQDIAHSCGEVCARVEGCPHACTLLCHPGPCPPCQAQVKRECGCGKTSKTMQCCIKETIECDSTCDKLLNCELHVCLEKCHEGKCPACKEKVDQRCHCTKNERQVTCTRESHDKHVYSCGKPCGKDLACGNHKCKDCCHAGECKSCKMAPDTVTSCPCGKMPIVPEQRKSCLDPVPVCEGVCGKTLKCGKSTNPHHCTFKCHLANCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHFCPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELFCECGAEVIYPPVPCGTKRPVCKRPCSRKHPCDHAPQHNCHSSATCPPCMMFTTKWCFGQHEQRKTIPCSQQSFSCGLACNKPLPCGRHKCIKTCHEGGCQTPGEICKQSCTTARATCGHKCMSPCHNGDCPETPCKEMVEVQCECGNRKQMRTCAELAREFSRIATAQLASSMAEMQRGNYMELSEILAPVKLSNKSNKTLDCNDECRVLERNRRLAIGLQIRNPDLPQKLLTKYSDFIRNFAKRDPGLVKSIHDALTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAFKDRSWLPATSIMEVVARESGQRRVPVPSNNAWGLKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01375412;
90% Identity
-
80% Identity
-