Pdom057906.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- -
- Assembly
- GCA_947397865.1
- Location
- OX377620.1:41543839-41547426[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00074 0.14 14.4 1.1 1 23 285 308 285 308 0.93 2 8 0.00011 0.021 17.0 5.9 5 23 319 338 311 338 0.84 3 8 0.017 3.2 10.1 0.5 3 23 363 384 361 384 0.95 4 8 4.3e-06 0.00079 21.5 1.8 2 23 391 413 390 413 0.95 5 8 1.7e-06 0.00032 22.7 2.5 1 23 421 443 421 443 0.99 6 8 0.025 4.6 9.6 0.2 2 23 451 475 450 475 0.94 7 8 0.063 12 8.4 1.5 1 23 481 503 481 503 0.92 8 8 9.6e-05 0.018 17.2 2.5 1 23 509 531 509 531 0.98
Sequence Information
- Coding Sequence
- ATGATCTCAGTGGAGAATATGAGATATCATTGTCGAACATGTTTAATAAAACTTGAAGAATCTAATGGCAACGAGGATTCAAAGAAGTTTGTATTGATCAATAGATTTCCCAATGTTGAACAATTAATGCGCAAATGTTTGGGAAAGGTTCCTCATGACGACAACAATGATGAACTGTATGCGCAAACACCAAATATCTGTCTATTATGTCTGGATAAATGGGAAGACTTCGTAAAACATTATCGTTTGGCAAATAAGAGTGACGAGAGATTGAGGAAGATTTTGAGTAATGAGTTGGATCCAGGGGATGTGCAAAAAGGAAATAAGGTCATTTTCATACCAACCGAAACAGTGCATAGTAGCGACGAGATAGAAAAATACGAGACAACATCTCCATTCTACCAAGACAGCCCATCAAACACGTCTACTACCTTCACATTCGTTCTGCCCCAATCTGAAGGGCTGAATACTTTGCTGGAAGAACACGAGACTACCGAAATCTCTTCAAATTCCAAAATTTGTAATGACGACAGTTACATGTCAGAAGATTCCAACCATGATAATTACGAACAACAGCCTGCCAGAACAACAAAAAGGGTAATAAAATCTAAATCTAAAAGAAGGCAAAACTCTGCTGCTTATAAAATAAAAAGAAAATACGAAACAAGGAAATCTTTGAATGAAACAGCTCAAGTTCAAACATCTAATTCATCTCAGAGAACAAGTGAATGTTCTTCAAATAAAGGCAACAAAAAATTACGATATCATTGTGCCCCATGTAAGAAGTTCTTCTACGAAATATATCGATACGAAGGACATATAAAACAAGTACACGAAGGAGTACAAAAGCCCTATAGGTGTATAGACTGTGATAAAACCTATAGTAAATACAAAAATCTCACTTATCACATTGCCGAAAATCATTCGGAGAAATGTCAAGAAATTCATAAATGTGAGTGTAACAAGACTTTCAAAACGAAAGAAACACTCCGGCAACACATGAGAAAACAACATTCGGATAGCAGCAGCAAGGATTCAAAACAAAAAGAAAATGCCAGCAATAACAGAGAACTAACACGTACAATTTGTGATCAATGCGGTTTCATTGCTGCCCATCAATACACACTGGCACAACATATAAAAAATAAGCATACCGAAGCGAAAAAAATCAGTTGTGAACATTGTCCGAAGATATTTAAATCTCAGTATTCCCTGAAATACCACATGCTCAGCAGTCATAATCCCACAAATACAAAACCTTTCCAATGTACCGAATGTCAAATGACATTCACGCGTCAAACATTATTGAATATCCATAAACGTACCCACCTCAAGTACACGGAACGTTTAAAATGCGATTTTGAGGGTTGTAATGTACGGTTTGTCAAACCAGCCGATAAACGTCTTCATATGCGTTTAGTCCACTTGAAAGTGAAACAACACATTTGTGATTTTTGTGGCGAAGCTTTTGGAGCCATGCAAACGTTGCGACATCATCGCTATATACACACCGGGGAGAAGCCATATAAATGCAACGTTTGTGGACAGGGCTTCCGGCAACATACGGCAATGAAAACGCACCGTAAGGCACACTACGGAAAAGCAGAAAAAGAAGCTGCAAGGCCACTGGATGTGATAGATAATTTATCGGAAATGAATATACAGCTAGAACATAGTTTAAATTAA
- Protein Sequence
- MISVENMRYHCRTCLIKLEESNGNEDSKKFVLINRFPNVEQLMRKCLGKVPHDDNNDELYAQTPNICLLCLDKWEDFVKHYRLANKSDERLRKILSNELDPGDVQKGNKVIFIPTETVHSSDEIEKYETTSPFYQDSPSNTSTTFTFVLPQSEGLNTLLEEHETTEISSNSKICNDDSYMSEDSNHDNYEQQPARTTKRVIKSKSKRRQNSAAYKIKRKYETRKSLNETAQVQTSNSSQRTSECSSNKGNKKLRYHCAPCKKFFYEIYRYEGHIKQVHEGVQKPYRCIDCDKTYSKYKNLTYHIAENHSEKCQEIHKCECNKTFKTKETLRQHMRKQHSDSSSKDSKQKENASNNRELTRTICDQCGFIAAHQYTLAQHIKNKHTEAKKISCEHCPKIFKSQYSLKYHMLSSHNPTNTKPFQCTECQMTFTRQTLLNIHKRTHLKYTERLKCDFEGCNVRFVKPADKRLHMRLVHLKVKQHICDFCGEAFGAMQTLRHHRYIHTGEKPYKCNVCGQGFRQHTAMKTHRKAHYGKAEKEAARPLDVIDNLSEMNIQLEHSLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -